GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001496-TA|BGIBMGA001496-PA|undefined
         (188 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53...    30   1.3  
04_01_0482 - 6315419-6316008,6316071-6316467                           29   2.3  
02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817           29   3.1  
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    28   4.1  
12_02_0266 - 16582912-16584918,16585041-16585229                       28   5.4  
03_06_0678 - 35480711-35484658                                         28   5.4  
01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931...    28   5.4  
11_06_0125 - 20356683-20357071,20359531-20362285                       27   7.1  
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436...    27   7.1  
07_03_1293 - 25563431-25563545,25564078-25564196,25564300-255644...    27   9.4  

>01_01_0069 +
          536787-537068,537193-537493,537528-537581,
          538848-539241,539345-539595,539678-539798,
          539893-540133,540341-540445,540571-540615,
          540738-540890,541132-541410,541705-541841,
          541975-542017,542228-542329
          Length = 835

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 4/34 (11%)

Query: 19 VKFPEKFKGTIIEKWADYWKNLFIDYRQMLQDLR 52
          VKF ++F+G ++ +W    K+ F+DY  + +DL+
Sbjct: 2  VKFSKQFEGQLVPEW----KHAFVDYSLLKKDLK 31


>04_01_0482 - 6315419-6316008,6316071-6316467
          Length = 328

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 43  DYRQMLQDLRSDIQDDPMKAMKWTTGIITFYLLSRNNPTECDFKDNLKIINN 94
           D  QMLQD + D +       K  T +      ++N  ++  F D LK++NN
Sbjct: 119 DLGQMLQDAKEDCESCKQGHKKLDTTLEFLQWKAKNGVSDKAFGDLLKLVNN 170


>02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817
          Length = 633

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 70  ITFYLLSRNNPTE---CDFKDNLKIINNEV-GLVSEECLNPKAVEHLRFL 115
           +++ L S + P E   C     LK  NNE+ G +S+E  +   +EHL FL
Sbjct: 201 LSYNLFSGSIPAEIGKCSSLRVLKASNNEINGSLSDELFDASMLEHLSFL 250


>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 104 LNPKAVEHLRFLDTCYNQEVIHY-RSLGILSVMYTSELS 141
           + PK + HLR+L+  Y+Q ++     + IL  + T +LS
Sbjct: 591 IQPKHLHHLRYLNLTYSQNMVRLPEEISILYNLQTLDLS 629


>12_02_0266 - 16582912-16584918,16585041-16585229
          Length = 731

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 123 VIHYRSLGILSVMYTSELSNSCDLYRAHCTYTKPTYFSFPSRIVDIGFM 171
           V+H R  G  S     +LS  C+L++      +  +F FP  I ++ ++
Sbjct: 380 VLHMRIEGYFSFRAIYDLSPICNLFQLRYLKLEGIFFQFPDTIGELRYL 428


>03_06_0678 - 35480711-35484658
          Length = 1315

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 104 LNPKAVEHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCD 145
           L PK + HLR+LD  Y++       + IL  + T  LS  CD
Sbjct: 590 LKPKYLHHLRYLDLSYSKIEALPEDISILYHLQTLNLS-ICD 630


>01_01_1170 -
           9318332-9318461,9318551-9318613,9318694-9318744,
           9318837-9318921,9319005-9319068,9319139-9319340,
           9319808-9320502
          Length = 429

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 93  NNEVGLVSEECLNPKAVEHLRFLDTCYNQEVIHYRSLGIL---SVMYTSELSNSCDLYRA 149
           NN   L+ E   NP A++H    D    +E + ++SL +    S+++  E S    L+RA
Sbjct: 94  NNSSLLLVEPQFNPPALQHAT--DELVFEE-LGFKSLCVADAPSLVHLYEASRQPSLFRA 150

Query: 150 HCTYTKPTYFSF 161
            C+      FSF
Sbjct: 151 QCSLVVDCGFSF 162


>11_06_0125 - 20356683-20357071,20359531-20362285
          Length = 1047

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 128 SLGILSVMYTSELSNSCDLYRAHCTYTKPTYFSFPSRIVDIGFMGKW 174
           SL +LS  Y      S    R+     +P   SF S ++  GF+  W
Sbjct: 11  SLLLLSCFYAQVSPGSSSSSRSTAMADEPALLSFKSMLLSDGFLASW 57


>01_06_1057 -
           34142979-34143114,34143212-34143390,34143496-34143669,
           34143757-34144005,34144108-34144233,34144341-34144565,
           34144657-34144747,34144837-34144951,34145312-34145366
          Length = 449

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/52 (23%), Positives = 27/52 (51%)

Query: 45  RQMLQDLRSDIQDDPMKAMKWTTGIITFYLLSRNNPTECDFKDNLKIINNEV 96
           R++++D+     D+ +  + +   I  FY ++ N    CD+ D    IN+++
Sbjct: 172 REVIEDIDKLDGDNELAVVDYIEDIYKFYKVAENECRPCDYIDTQVEINSKM 223


>07_03_1293 -
           25563431-25563545,25564078-25564196,25564300-25564467,
           25564565-25564627,25564709-25564816,25565125-25565237,
           25565313-25565609,25565724-25565802,25566116-25566224,
           25566324-25566365,25567023-25567153,25568100-25568648
          Length = 630

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 48  LQDLRSDIQDDPMKAMKWTTGIITFYLLSRNNPTE------CDFKDNLKIINNEVGLVSE 101
           ++D+R +++   +KA+     ++ FY    +N         C+  + L  I +  G  SE
Sbjct: 190 IEDVRREVKI--LKALAGHKNLVQFYDAYEDNDNVYIVMELCEGGELLDRILSRGGKYSE 247

Query: 102 ECLNPKAVEHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNS 143
           +      V+ L  +  C+ Q V+H R L   + ++TS+  NS
Sbjct: 248 DDAKAVLVQILNVVSFCHIQGVVH-RDLKPENFLFTSKDENS 288


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.137    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,345,869
Number of Sequences: 37544
Number of extensions: 206509
Number of successful extensions: 470
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 10
length of query: 188
length of database: 14,793,348
effective HSP length: 78
effective length of query: 110
effective length of database: 11,864,916
effective search space: 1305140760
effective search space used: 1305140760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)