GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001496-TA|BGIBMGA001496-PA|undefined
         (188 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19727| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   4e-16
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)        31   0.78 
SB_49819| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)                     28   4.2  
SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_24581| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)               28   4.2  
SB_21743| Best HMM Match : rve (HMM E-Value=4e-17)                     28   4.2  
SB_39137| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_13669| Best HMM Match : zf-CCHC (HMM E-Value=1.3e-06)               28   5.5  
SB_4864| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)                28   5.5  
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_27052| Best HMM Match : Clathrin (HMM E-Value=3.3)                  27   9.6  

>SB_19727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 2/149 (1%)

Query: 40  LFIDYRQMLQDLRSDIQDDPMKAMKWTTGIITF-YLLSRNNPTECDFKDNLKIINNEVGL 98
           +++DY+ +  D     +  P++      G++ F Y++  NNP +  + D L    NE+  
Sbjct: 38  VYVDYKAVFVDFFKGARSKPLRT-SLGLGLLGFGYVVYLNNPDDDSYNDTLLDNANELLQ 96

Query: 99  VSEECLNPKAVEHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCDLYRAHCTYTKPTY 158
           V E   NP +  + + +   + Q  +  +S G+ S+M  +E    CDLY  HC YTK  +
Sbjct: 97  VGERIRNPSSDVYTQEMLQLFYQGKLRRQSFGLFSLMMQTEFGKDCDLYEQHCYYTKTRW 156

Query: 159 FSFPSRIVDIGFMGKWWNLFIKSTNYDVN 187
                 + D G +G W+ L     +YDVN
Sbjct: 157 VDLWKYVRDFGILGHWYKLETAMIDYDVN 185


>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
          Length = 1017

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 60  MKAMKWTTGIITFYLLSRNNPTECDFKDNLKIINNEVGLVSEECLNPKAVEHLRFLDTCY 119
           +K ++WTT  I ++    NN   C+  +  K  +  + L+ EECL P  V  L FL+   
Sbjct: 303 VKGIEWTT--IEYF----NNAVICELIE--KNHSGILALLDEECLRPGEVSDLTFLEKLD 354

Query: 120 NQEVIH 125
            Q + H
Sbjct: 355 KQWIHH 360


>SB_49819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 663

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 47  MLQDLRSDIQDDPMKAMKWTTGIITFYLLSRNNPTECDFKDNLKIINNEVGLVSEECLNP 106
           + Q  + +I      AMK  +G +    +S  +  +    D+LK I+  +   +EE L  
Sbjct: 126 LCQQGQREIPITDQNAMKDISGCVAGLKISTPHQVDKVALDSLKDIDKHMANQNEEELLQ 185

Query: 107 KAVEHLRFLDTCYNQ 121
           + VE LR LDTC ++
Sbjct: 186 REVEGLR-LDTCLSE 199


>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 89  LKIINNEVGLVSEECLNPKAVEHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCDL 146
           L+   NE G  S+    P  +E     +   N  ++H R L +LS+M ++     CD+
Sbjct: 38  LQAETNEAGEKSKILKCPCCLEKTETANGEANYSILHSRFLEVLSIMESNTSGKECDI 95


>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 22 PEKFKGTIIEKWADYWKNLFIDYRQMLQDLRSDIQDDPMK 61
          P   +G ++E W D+  +   DY  +  DLRS +   P K
Sbjct: 11 PMSLQGDVVENWRDFESSW--DYYTIATDLRSKLTSPPGK 48


>SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)
          Length = 1065

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 22 PEKFKGTIIEKWADYWKNLFIDYRQMLQDLRSDIQDDPMK 61
          P   +G ++E W D+  +   DY  +  DLRS +   P K
Sbjct: 11 PMSLQGDVVENWRDFESSW--DYYTIATDLRSKLTSPPGK 48


>SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 22 PEKFKGTIIEKWADYWKNLFIDYRQMLQDLRSDIQDDPMK 61
          P   +G ++E W D+  +   DY  +  DLRS +   P K
Sbjct: 11 PMSLQGDVVENWRDFESSW--DYYTIATDLRSKLTSPPGK 48


>SB_24581| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)
          Length = 469

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 22 PEKFKGTIIEKWADYWKNLFIDYRQMLQDLRSDIQDDPMK 61
          P   +G ++E W D+  +   DY  +  DLRS +   P K
Sbjct: 11 PMSLQGDVVENWRDFESSW--DYYTIATDLRSKLTSPPGK 48


>SB_21743| Best HMM Match : rve (HMM E-Value=4e-17)
          Length = 865

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 22 PEKFKGTIIEKWADYWKNLFIDYRQMLQDLRSDIQDDPMK 61
          P   +G ++E W D+  +   DY  +  DLRS +   P K
Sbjct: 11 PMSLQGDVVENWRDFESSW--DYYTIATDLRSKLTSPPGK 48


>SB_39137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 13  KNISTKVKFPEKFKGTIIEKWADYWKNLFIDYRQMLQDLRSDIQD 57
           KNI  K     + +GT+ + W  + +  F+ Y+Q L++     ++
Sbjct: 135 KNIEEKHALRIQLEGTVEDLWRQFQQTAFLIYKQALKNYNETTEE 179


>SB_13669| Best HMM Match : zf-CCHC (HMM E-Value=1.3e-06)
          Length = 385

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 22 PEKFKGTIIEKWADYWKNLFIDYRQMLQDLRSDIQDDPMK 61
          P   +G ++E W D+  +   DY  +  DLRS +   P K
Sbjct: 11 PMSLQGDVVENWRDFESSW--DYYTIATDLRSKLTSAPGK 48


>SB_4864| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)
          Length = 426

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 22 PEKFKGTIIEKWADYWKNLFIDYRQMLQDLRSDIQDDPMK 61
          P   +G ++E W D+  +   DY  +  DLRS +   P K
Sbjct: 11 PMSLQGDVVENWRDFESSW--DYYTIATDLRSKLTSAPGK 48


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/29 (31%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 28 TIIEKWADYWKNLFID-YRQMLQDLRSDI 55
          +++ +W + W+NL++D  +Q+ Q + S I
Sbjct: 18 SVLREWGNMWQNLYLDQLKQLKQKVTSTI 46


>SB_27052| Best HMM Match : Clathrin (HMM E-Value=3.3)
          Length = 203

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 109 VEHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNS 143
           VEH   ++   ++E++ +R LG LS++     SN+
Sbjct: 76  VEHRELVELVEHRELVEHRELGFLSILDARVNSNT 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.137    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,625,483
Number of Sequences: 59808
Number of extensions: 271230
Number of successful extensions: 552
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 14
length of query: 188
length of database: 16,821,457
effective HSP length: 78
effective length of query: 110
effective length of database: 12,156,433
effective search space: 1337207630
effective search space used: 1337207630
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)