GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001496-TA|BGIBMGA001496-PA|undefined
         (188 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   2.5  
U43500-1|AAA93303.1|  280|Anopheles gambiae a-CD36 protein.            23   4.4  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   4.4  

>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 10/45 (22%), Positives = 21/45 (46%)

Query: 35  DYWKNLFIDYRQMLQDLRSDIQDDPMKAMKWTTGIITFYLLSRNN 79
           ++W    I   + +    + + +D  K  K+ TG +T++L    N
Sbjct: 483 NFWYKKLITIHEQIAACFNTVLEDSRKLPKFITGGVTYFLPKDQN 527


>U43500-1|AAA93303.1|  280|Anopheles gambiae a-CD36 protein.
          Length = 280

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 148 RAHCTYTKPTYFSFP 162
           R+ C Y  PT+ SFP
Sbjct: 258 RSACKYGSPTFVSFP 272


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 118 CYNQEVIHYRSLGILSVMYTSELSNSCDLYRAHCTYTKPTYFSFP 162
           C+  E +H+  +          LS +CD+     + + P Y + P
Sbjct: 262 CFALEAVHFAEIARTPETLQVALSRACDVAMERVSSSTPYYQTKP 306


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.137    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,579
Number of Sequences: 2123
Number of extensions: 7918
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 188
length of database: 516,269
effective HSP length: 60
effective length of query: 128
effective length of database: 388,889
effective search space: 49777792
effective search space used: 49777792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)