GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001496-TA|BGIBMGA001496-PA|undefined
         (188 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   3.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   3.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 74  LLSRNNPTE-CDFKDNLKIINNEVGLVSEECLNPKAVEHLRFLDTCYN 120
           L +  NP + C+  D++ I+ ++V   +E C     +E +  L+  Y+
Sbjct: 407 LRNGENPIDTCEMFDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYS 454


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 13  KNISTKVKFPEKFKGTIIEKWADYWKN 39
           + I   V+F    KGT I+ W D   N
Sbjct: 385 RQIYNMVRFRNLVKGTKIDNWWDNGSN 411


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 94  NEVGLVSEECLNPKAVEHLRFLD 116
           N     SEE +N + +E LRFL+
Sbjct: 796 NFADFYSEESINNQGLECLRFLN 818


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 20  KFPEKFKGTIIEKWADYWKNLFIDYRQMLQDLRSDIQDD 58
           K P + +  I E +   ++  F D   +L +L   +++D
Sbjct: 403 KLPREMRQRITEYFEHRYQGKFFDEELILGELSEKLRED 441


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 20  KFPEKFKGTIIEKWADYWKNLFIDYRQMLQDLRSDIQDD 58
           K P + +  I E +   ++  F D   +L +L   +++D
Sbjct: 371 KLPREMRQRITEYFEHRYQGKFFDEELILGELSEKLRED 409


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,373
Number of Sequences: 429
Number of extensions: 2532
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 188
length of database: 140,377
effective HSP length: 54
effective length of query: 134
effective length of database: 117,211
effective search space: 15706274
effective search space used: 15706274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)