Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001495-TA|BGIBMGA001495-PA|IPR000626|Ubiquitin
(364 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 38 0.014
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 38 0.014
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-... 38 0.014
At3g59690.1 68416.m06660 calmodulin-binding family protein simil... 36 0.056
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER... 34 0.13
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 34 0.17
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 33 0.30
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 31 1.6
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 31 1.6
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 31 1.6
At4g05230.1 68417.m00789 ubiquitin family protein contains INTER... 30 2.1
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 30 2.1
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 30 2.1
At2g30100.1 68415.m03663 ubiquitin family protein low similarity... 30 2.1
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 30 2.1
At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains ... 30 2.8
At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) simil... 29 3.7
At1g03380.1 68414.m00317 expressed protein 29 3.7
At5g49470.2 68418.m06121 protein kinase family protein contains ... 29 4.9
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 29 4.9
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 29 4.9
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 29 4.9
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 29 4.9
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 29 4.9
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 29 4.9
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 29 4.9
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 29 4.9
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 29 4.9
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 29 4.9
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 29 4.9
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 29 4.9
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 29 4.9
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 29 4.9
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 29 4.9
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 29 4.9
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 29 4.9
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 29 4.9
At3g42800.1 68416.m04480 expressed protein hypothetical proteins... 29 4.9
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 29 4.9
At2g40830.3 68415.m05041 zinc finger (C3HC4-type RING finger) fa... 29 4.9
At2g40830.2 68415.m05040 zinc finger (C3HC4-type RING finger) fa... 29 4.9
At2g40830.1 68415.m05039 zinc finger (C3HC4-type RING finger) fa... 29 4.9
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 29 4.9
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 29 4.9
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 29 4.9
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 29 4.9
At1g30320.1 68414.m03708 remorin family protein contains Pfam do... 29 4.9
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 29 4.9
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 29 6.4
At1g37050.1 68414.m04624 hypothetical protein 29 6.4
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 37.5 bits (83), Expect = 0.014
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 28 LENTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVKS 72
L++TV+S + + S+VP++ LI+ G+ILKD TL G+++
Sbjct: 36 LDSTVESFKELVAQSSDVPANQQRLIYKGRILKDDQTLLSYGLQA 80
Score = 36.3 bits (80), Expect = 0.032
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 320 ASSSQSPGGREDNFTTQLNHMHEMGLLDDALNVRALLICSG 360
+ ++QS E+ + TQL + EMG D A N+RALL +G
Sbjct: 496 SGTNQSNVPPEERYATQLQQLQEMGFYDRAENIRALLATNG 536
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 37.5 bits (83), Expect = 0.014
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 28 LENTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVKS 72
L++TV+S + + S+VP++ LI+ G+ILKD TL G+++
Sbjct: 36 LDSTVESFKELIAQNSDVPANQQRLIYKGRILKDDQTLLSYGLQA 80
Score = 36.3 bits (80), Expect = 0.032
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 330 EDNFTTQLNHMHEMGLLDDALNVRALLICSG 360
E+ F TQL + EMG D A N+RALL +G
Sbjct: 493 EERFATQLQQLQEMGFYDRAENIRALLATNG 523
>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
domain-containing protein low similarity to NUB1
(NEDD8-interacting protein) [Homo sapiens] GI:13383476;
contains Pfam profile PF00627: UBA/TS-N domain
Length = 562
Score = 37.5 bits (83), Expect = 0.014
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 28 LEN-TVDSLRTEAEKRSNVPSSSLELIHHGKILKDKA----TLQECGVK 71
LEN T++ LR E KRS + S++LI GKILKD TL + G+K
Sbjct: 18 LENWTLNMLRDEVAKRSGLDPESIKLIFAGKILKDDGDATLTLSQLGIK 66
>At3g59690.1 68416.m06660 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 517
Score = 35.5 bits (78), Expect = 0.056
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 258 SHESLLRLLHAGDSSRPHSSTQTS-GPSRSVITPEMFSEAISEAINRSSNRQSDGTPMEQ 316
S+++ RL ++ D+S P+SS T PSR + TP+ +S ++S +R R + +P +
Sbjct: 342 SNQNHFRLNNSFDTSTPNSSKSTFVTPSRPIHTPQPYSSSVSR-YSRGGGRATQDSPFKD 400
Query: 317 STAASS 322
+ +S
Sbjct: 401 DDSLTS 406
>At3g13235.1 68416.m01666 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 414
Score = 34.3 bits (75), Expect = 0.13
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Query: 29 ENTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVKSGEMXXXXXXXXXXXXX 88
+ TV++++ E SNVP +L+++G + + L GVK ++
Sbjct: 20 QETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSALGVKDDDLLMMMVSNASSGSA 79
Query: 89 XPPTYTDAELQQLNASLRTLGCTPNAPGWTRAM-QLLNDDSVMAEII 134
D + ++L + G + M QL +D +A++I
Sbjct: 80 TSAAGNDLGMNPDGSALNPAAFQQHIRGDSNLMGQLFQNDPELAQVI 126
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative
similar to DNA repair by nucleotide excision (NER)
RAD23 protein, isoform I GI:1914683 from [Daucus
carota]
Length = 378
Score = 33.9 bits (74), Expect = 0.17
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 38 EAEKRSNVPSSSLELIHHGKILKDKATLQECGV 70
E K + P++ LIH GK+LKD+ TL+E V
Sbjct: 31 ETVKGAEYPAAKQMLIHQGKVLKDETTLEENNV 63
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative
similar to DNA repair by nucleotide excision (NER)
RAD23 protein, isoform II GI:1914685 from [Daucus
carota]
Length = 368
Score = 33.1 bits (72), Expect = 0.30
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 38 EAEKRSNVPSSSLELIHHGKILKDKATLQE 67
+++ + N P LIH+GK+LKD+ TL E
Sbjct: 32 DSQSKDNYPCGQQLLIHNGKVLKDETTLVE 61
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative
similar to DNA repair by nucleotide excision (NER)
RAD23 protein, isoform II GI:1914685 from [Daucus
carota]; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 351
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 38 EAEKRSNVPSSSLELIHHGKILKDKATLQE 67
+++ + N P LIH+GK+LKD+ +L E
Sbjct: 32 DSQGKDNYPCGQQLLIHNGKVLKDETSLVE 61
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative
similar to DNA repair by nucleotide excision (NER)
RAD23 protein, isoform II GI:1914685 from [Daucus
carota]; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 365
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 38 EAEKRSNVPSSSLELIHHGKILKDKATLQE 67
+++ + N P LIH+GK+LKD+ +L E
Sbjct: 32 DSQGKDNYPCGQQLLIHNGKVLKDETSLVE 61
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative
similar to DNA repair by nucleotide excision (NER)
RAD23 protein, isoform II GI:1914685 from [Daucus
carota]; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 371
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 38 EAEKRSNVPSSSLELIHHGKILKDKATLQE 67
+++ + N P LIH+GK+LKD+ +L E
Sbjct: 32 DSQGKDNYPCGQQLLIHNGKVLKDETSLVE 61
>At4g05230.1 68417.m00789 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 206
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 27 GLENTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQEC 68
G +TV ++ + EK +P S L+ G +L+D +++C
Sbjct: 18 GYWDTVLEIKQKIEKYQRIPVSKQTLLFQGNVLQDHLDIEQC 59
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 46 PSSSLELIHHGKILKDKATLQE 67
P++ LIH GK+LKD+ T++E
Sbjct: 40 PAAKQMLIHQGKVLKDETTIEE 61
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 46 PSSSLELIHHGKILKDKATLQE 67
P++ LIH GK+LKD+ T++E
Sbjct: 40 PAAKQMLIHQGKVLKDETTIEE 61
>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
(Ras-binding protein Sur-8) {Homo sapiens}; contains
Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
repeat, PF00560: Leucine Rich Repeat
Length = 897
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 31 TVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVKSG 73
TV L+++ + +NV +LI GK+L + +TL++ V SG
Sbjct: 556 TVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSG 598
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+L+ + + + +P LI GK L+D TL + ++
Sbjct: 97 DTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
>At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains
Pfam PF04153: NOT2 / NOT3 / NOT5 family; similar to Rga
(GI:1658504) [Drosophila melanogaster]
Length = 444
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 311 GTPMEQSTAASSSQSPGGREDNFTTQLNHMHEMGLLDD 348
G+P S +S S GG N +N + MGLL+D
Sbjct: 87 GSPQVLSMLGNSYPSAGGLSQNHVQAMNSLSSMGLLND 124
>At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) similar
to SP|Q64548 Reticulon 1 (Neuroendocrine-specific
protein) {Rattus norvegicus}; contains Pfam profile
PF02453: Reticulon
Length = 271
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 270 DSSRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQSDGTPMEQSTAASSSQSP 326
D + S+ P+ V+ E E +SE I+ + S + +++ SSS SP
Sbjct: 3 DEHKHEESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSP 59
>At1g03380.1 68414.m00317 expressed protein
Length = 926
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 18 IERHKLENFGLENTVDSLRTEAEKRSNVPSSSLELIHHGKILKD 61
+ R K +FG NTV + T A + VPS ++ + H + D
Sbjct: 487 VSRIKYSSFGWLNTVSNATTAATGKVFVPSGAVAAVFHKSVTHD 530
>At5g49470.2 68418.m06121 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 834
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 260 ESLLRLLHAGDSSRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQS-DGTPMEQST 318
E LL+ + + S+ H + S R ++ EM + S + R R S DGTPM + T
Sbjct: 9 EELLKKIRELEESQEHLKREMS---RLKVSAEMKQRSHSASPQRPVRRNSNDGTPMWRKT 65
Query: 319 AASS 322
A+S
Sbjct: 66 GAAS 69
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to
GI:17677
Length = 382
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 97 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 173 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 249 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 290
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 325 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 366
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 97 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 173 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 249 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 290
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 97 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 173 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 249 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 290
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 290 PEMFSEAISEAINRSSNRQSDGTPMEQST--AASSSQSPGGREDNFTTQLNHMHE 342
PE S+ E S +R+ T + T + S + PG R +N TT+L+ + E
Sbjct: 623 PEEKSKKAEEVSLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENSTTKLDAVQE 677
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 290 PEMFSEAISEAINRSSNRQSDGTPMEQST--AASSSQSPGGREDNFTTQLNHMHE 342
PE S+ E S +R+ T + T + S + PG R +N TT+L+ + E
Sbjct: 621 PEEKSKKAEEVSLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENSTTKLDAVQE 675
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 290 PEMFSEAISEAINRSSNRQSDGTPMEQST--AASSSQSPGGREDNFTTQLNHMHE 342
PE S+ E S +R+ T + T + S + PG R +N TT+L+ + E
Sbjct: 623 PEEKSKKAEEVSLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENSTTKLDAVQE 677
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 290 PEMFSEAISEAINRSSNRQSDGTPMEQST--AASSSQSPGGREDNFTTQLNHMHE 342
PE S+ E S +R+ T + T + S + PG R +N TT+L+ + E
Sbjct: 623 PEEKSKKAEEVSLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENSTTKLDAVQE 677
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 97 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 173 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 97 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 173 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 249 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 290
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 325 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 366
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 97 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 173 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 249 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 290
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 97 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 173 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 249 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 290
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 325 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 366
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 97 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 173 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 249 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 290
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 97 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 173 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 97 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 173 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 249 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 290
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 97 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 173 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 97 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 173 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 249 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 290
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) /
40S ribosomal protein S27A (RPS27aC) identical to
GI:166933, GI:166934
Length = 157
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) /
60S ribosomal protein L40 (RPL40B) identical to
GI:166929, GI:166930
Length = 128
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
>At3g42800.1 68416.m04480 expressed protein hypothetical proteins -
Arabidopsis thaliana; expression supported by MPSS
Length = 341
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 295 EAISEAINRSSNRQSD--GTPMEQSTAASSSQSPGGREDNFTT 335
+++ +I+ S QSD G+ E +++SSS SP ++D TT
Sbjct: 18 DSVYRSIDESDGLQSDLKGSINENVSSSSSSPSPNKKDDKLTT 60
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) /
40S ribosomal protein S27A (RPS27aB) identical to
GI:166936
Length = 157
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
>At2g40830.3 68415.m05041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 328
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 271 SSRPHSSTQTSGPSRSVITPEMFSEAIS-EAINRSSNRQSDGTPMEQSTAASSS-QSPGG 328
+S P SS + P+R+ + S + S E N N S P S ++SSS Q+ GG
Sbjct: 237 ASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRGG 296
Query: 329 REDNFTTQLNH 339
++ T+ NH
Sbjct: 297 TRNSDTSDENH 307
>At2g40830.2 68415.m05040 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 328
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 271 SSRPHSSTQTSGPSRSVITPEMFSEAIS-EAINRSSNRQSDGTPMEQSTAASSS-QSPGG 328
+S P SS + P+R+ + S + S E N N S P S ++SSS Q+ GG
Sbjct: 237 ASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRGG 296
Query: 329 REDNFTTQLNH 339
++ T+ NH
Sbjct: 297 TRNSDTSDENH 307
>At2g40830.1 68415.m05039 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 328
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 271 SSRPHSSTQTSGPSRSVITPEMFSEAIS-EAINRSSNRQSDGTPMEQSTAASSS-QSPGG 328
+S P SS + P+R+ + S + S E N N S P S ++SSS Q+ GG
Sbjct: 237 ASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRGG 296
Query: 329 REDNFTTQLNH 339
++ T+ NH
Sbjct: 297 TRNSDTSDENH 307
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) /
60S ribosomal protein L40 (RPL40A) identical to
GI:166930, GI:166931
Length = 128
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQE 67
+T+D+++ + + + +P LI GK L+D TL +
Sbjct: 97 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
>At1g30320.1 68414.m03708 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 509
Score = 29.1 bits (62), Expect = 4.9
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 270 DSSRPHSSTQTSGPS-RSVITPEMFSEAI---SEAINRSSNRQSDGTPMEQSTAASSSQS 325
DSS H+ T GP+ RSV +M +E S+ +RS TP+ T++ S
Sbjct: 270 DSSHDHT---TGGPAIRSVCMRDMGTEMTPIPSQEPSRSVTPVGATTPLRSPTSSLPSTP 326
Query: 326 PGGREDNFTTQLNHMHEMGLLDDALNVRALLICSG 360
GG+ + + N E+ ++ R ++ G
Sbjct: 327 RGGQPEESSMSKNTRRELSEEEEKAKTRREIVALG 361
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + +P LI GK L+D TL + ++
Sbjct: 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 30 NTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVK 71
+T+D+++ + + + VP LI GK L D TL + ++
Sbjct: 99 DTIDNVKAKIQDKEGVPPDQQRLIFAGKQLDDGRTLADYNIQ 140
>At1g37050.1 68414.m04624 hypothetical protein
Length = 620
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 270 DSSRPHSSTQTSGPSRSVITPEMFSEAISEAINR--SSNRQSDGTPMEQSTAASSSQSPG 327
DS+ HS + + E E + IN N Q + T E ST + S+++PG
Sbjct: 253 DSNLSHSKVSDMNEAIEKVMVEKILEEVQARINLPIGGNNQDNATEEEWSTPSKSTRTPG 312
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.127 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,319,824
Number of Sequences: 28952
Number of extensions: 252566
Number of successful extensions: 825
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 742
Number of HSP's gapped (non-prelim): 93
length of query: 364
length of database: 12,070,560
effective HSP length: 82
effective length of query: 282
effective length of database: 9,696,496
effective search space: 2734411872
effective search space used: 2734411872
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)
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