GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001495-TA|BGIBMGA001495-PA|IPR000626|Ubiquitin
         (364 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    26   0.37 
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    26   0.37 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.4  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   8.0  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 291 EMFSEAISEAINRSSNRQSDGTPMEQSTAASSSQSPGGREDNFTTQLNHMHE 342
           ++F  A +EA    S+    G+  + S++ S+S SP  R   + +  +H H+
Sbjct: 22  QLFQSATTEAPAAYSSSSPSGSSPQHSSS-SASTSPAARMYPYVSAAHHHHQ 72


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 291 EMFSEAISEAINRSSNRQSDGTPMEQSTAASSSQSPGGREDNFTTQLNHMHE 342
           ++F  A +EA    S+    G+  + S++ S+S SP  R   + +  +H H+
Sbjct: 22  QLFQSATTEAPAAYSSSSPSGSSPQHSSS-SASTSPAARMYPYVSAAHHHHQ 72


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 304  SSNRQSDGTPMEQSTAASSSQSPGGREDNFTTQLNHMHEM 343
            + N      P E  T  ++ + PGG   +   + N  H +
Sbjct: 973  AENEIGSSEPSETVTIITAEEVPGGPPTSIRVETNDQHSL 1012


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 188 RSRSSTGSTPGDTAPTSGFAYSLEA 212
           RS+   G T GDT+       SLEA
Sbjct: 79  RSKRPNGDTNGDTSQVDDQNESLEA 103


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.127    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,048
Number of Sequences: 317
Number of extensions: 2315
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 364
length of database: 114,650
effective HSP length: 58
effective length of query: 306
effective length of database: 96,264
effective search space: 29456784
effective search space used: 29456784
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)