Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001495-TA|BGIBMGA001495-PA|IPR000626|Ubiquitin
(364 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.006
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.48
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 33 0.48
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 32 0.84
SB_29060| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.84
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_36254| Best HMM Match : Filament (HMM E-Value=0.21) 30 2.6
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 30 2.6
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_16019| Best HMM Match : AT_hook (HMM E-Value=1) 29 4.5
SB_13045| Best HMM Match : Ras (HMM E-Value=0) 29 4.5
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 29 4.5
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_17147| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.8
SB_51988| Best HMM Match : bZIP_2 (HMM E-Value=7.3e-13) 29 7.8
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 29 7.8
SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.8
>SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 39.1 bits (87), Expect = 0.006
Identities = 29/137 (21%), Positives = 49/137 (35%)
Query: 189 SRSSTGSTPGDTAPTSGFAYSLEALSXXXXXXXXXXXXXXXRNQIXXXXXXXXXXXXXXX 248
S SS+ S+ ++ +S + S + S +
Sbjct: 119 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSS 178
Query: 249 VSTPRSGGGSHESLLRLLHAGDSSRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQ 308
S+ S S S + SS SS+ +S S S + S + S + + SSN
Sbjct: 179 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSNNS 238
Query: 309 SDGTPMEQSTAASSSQS 325
S + S+++SSS S
Sbjct: 239 SSSSSSSSSSSSSSSSS 255
Score = 37.9 bits (84), Expect = 0.013
Identities = 28/137 (20%), Positives = 49/137 (35%)
Query: 189 SRSSTGSTPGDTAPTSGFAYSLEALSXXXXXXXXXXXXXXXRNQIXXXXXXXXXXXXXXX 248
S SS+ S+ ++ +S + S + S +
Sbjct: 101 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 160
Query: 249 VSTPRSGGGSHESLLRLLHAGDSSRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQ 308
S+ S S S + SS SS+ +S S S + S + S + + SSN
Sbjct: 161 SSSNSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSS 220
Query: 309 SDGTPMEQSTAASSSQS 325
S + S+++SSS +
Sbjct: 221 SSSSSSSSSSSSSSSNN 237
Score = 37.5 bits (83), Expect = 0.017
Identities = 28/137 (20%), Positives = 49/137 (35%)
Query: 189 SRSSTGSTPGDTAPTSGFAYSLEALSXXXXXXXXXXXXXXXRNQIXXXXXXXXXXXXXXX 248
S SS+ S+ ++ +S + S + S +
Sbjct: 120 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSS 179
Query: 249 VSTPRSGGGSHESLLRLLHAGDSSRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQ 308
S+ S S S + SS SS+ +S S S + S + S + + S+N
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSNNSS 239
Query: 309 SDGTPMEQSTAASSSQS 325
S + S+++SSS S
Sbjct: 240 SSSSSSSSSSSSSSSSS 256
Score = 37.1 bits (82), Expect = 0.022
Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 2/137 (1%)
Query: 189 SRSSTGSTPGDTAPTSGFAYSLEALSXXXXXXXXXXXXXXXRNQIXXXXXXXXXXXXXXX 248
SRSS+ S + +S + S + S +
Sbjct: 49 SRSSSNSNNSSNSSSSSSSSSNSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSS 108
Query: 249 VSTPRSGGGSHESLLRLLHAGDSSRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQ 308
S+ S S S + SS SS+ +S S S + S + S + + SSN
Sbjct: 109 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--SSSSSSSSSSSSSSSSSNSS 166
Query: 309 SDGTPMEQSTAASSSQS 325
S + S+++SSS S
Sbjct: 167 SSSSSSSSSSSSSSSSS 183
>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 32.7 bits (71), Expect = 0.48
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 253 RSGGGSHESLLRLLHAGDSSRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQSDGT 312
R GGG + ++ +H P S TS P S + E + A S + +SN ++ T
Sbjct: 323 RGGGGGLLARVKAMHKAGVQAPESGPPTSAPFLSPASAEKKTVAESTPTSTTSNDKTHST 382
Query: 313 PMEQSTAASSS 323
P S+S
Sbjct: 383 PAGDDKRDSAS 393
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 32.7 bits (71), Expect = 0.48
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 269 GDSSRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQSDGT---PMEQSTAASSSQS 325
G S++ H+ + S P + TP + S A+S + + +NR T P + TAA SS S
Sbjct: 798 GGSTQSHAHKRESSPKALLPTPPL-SHALSPYV-KETNRMITPTRHAPSQNKTAAQSSGS 855
Query: 326 PG 327
PG
Sbjct: 856 PG 857
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 31.9 bits (69), Expect = 0.84
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 259 HESLLRLLHAGDSSRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQSDGTPMEQST 318
+ +L R SSR S +++ SRS I P +S ++S +++ SS +S TP +
Sbjct: 323 YRALQRSRQHKPSSRNTSRSRSPVRSRSPIHPRSWSRSVSHSLSHSSASRSP-TPEDWDR 381
Query: 319 AASSSQSP 326
+ + S+SP
Sbjct: 382 SRTPSRSP 389
>SB_29060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 31.9 bits (69), Expect = 0.84
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 261 SLLRLLHAGDSSRPHSSTQTSGPSRSVITPEMFSEAISEA----INRSSNRQSDGTPMEQ 316
S+L L A + P S+ SG S +P + S + + R+ Q+ + M
Sbjct: 74 SMLALALAS-AGLPSSNDSPSGAGPSGTSPSTGGTSSSSSRTNRVTRNLFSQAMSSAMSG 132
Query: 317 STAASSSQSPGGREDNFTTQLNHMHEMGLLDDALNVRALLICSG 360
S+AA SS S E QL + +MG+ D ++RAL G
Sbjct: 133 SSAAGSS-STELTETQLQGQLQQLRDMGITDQEASLRALRASGG 175
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 31.5 bits (68), Expect = 1.1
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 251 TPRSGGGSHESLLRLLHAGDSSRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQSD 310
TP SG GS S + S+ HS +++ S S S + S +++RS +R
Sbjct: 222 TPSSGSGSRNS----SRSASRSQSHSVSRSRSKSLSQSRSRSQSHSASRSVSRSRSRSRS 277
Query: 311 GTPMEQSTAASSSQSPGGREDNFTTQLNHMHEMG 344
G+ + + S S G HE G
Sbjct: 278 GSRSRTRSHSPSDHSSVGSRSPSKQPQTPPHESG 311
>SB_36254| Best HMM Match : Filament (HMM E-Value=0.21)
Length = 589
Score = 30.3 bits (65), Expect = 2.6
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 14 KPGPIERHKLENFGLENTVDSLR------TEAEKRSNVPSSSLE-LIHHGKILKDKATLQ 66
K I H+L+N GLE +++L+ EA++R+++ LE +I GK L +A +
Sbjct: 417 KDQDITSHRLKNAGLEKEIENLKKELYVTREAKERNDIRIKDLEKVIREGKELPKRAPMF 476
Query: 67 E 67
E
Sbjct: 477 E 477
>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1318
Score = 30.3 bits (65), Expect = 2.6
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 276 SSTQTSGPSRSV-ITPEMFSEAISEAINRSSNRQSDGTPMEQSTAASSSQSPGG 328
SST S PS S TP S +++ +NR +R+S G+ E + +S + G
Sbjct: 64 SSTPVSSPSNSTPSTPIRKSSSVTVTLNRRISRESCGSGRESRDSIDASMNEEG 117
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 30.3 bits (65), Expect = 2.6
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 14 KPGPIERHKLENFGLENTVDSLR------TEAEKRSNVPSSSLE-LIHHGKILKDKATLQ 66
K I H+L+N GLE +++L+ EA++R+++ LE +I GK L +A +
Sbjct: 2945 KDQDITSHRLKNAGLEKEIENLKKELYVTREAKERNDIRIKDLEKVIREGKELPKRAPMF 3004
Query: 67 E 67
E
Sbjct: 3005 E 3005
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 29.5 bits (63), Expect = 4.5
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 259 HESLLRLLHAGDSSRPHSSTQTSGPSRSVITPEMFS---EAISEAINRSSNRQSDGTPME 315
HES L A +P SST T SRS+ P FS E +E + + + ++ +G E
Sbjct: 533 HESSSPLARAATFPKPWSSTSTVPSSRSL--PRKFSSETEKNAEDLAKQAKKEGEGRQGE 590
Query: 316 QSTAASSSQSPGGREDNFTTQ--LNHMHEMGLLD 347
A + + E T+ L+H+ + D
Sbjct: 591 TGDKAENGLTSDADEKPLPTEEKLSHVKSSKIPD 624
>SB_16019| Best HMM Match : AT_hook (HMM E-Value=1)
Length = 429
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 269 GDSSRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQSDGTPMEQSTAASSSQSP 326
G ++RP S ++ + +MF I E+ +N++ G P+ S +SSS SP
Sbjct: 64 GPNARPESEATSTESNLMQRMSDMFVRWIEESFR--ANQRGRGRPVTSSVTSSSSASP 119
>SB_13045| Best HMM Match : Ras (HMM E-Value=0)
Length = 629
Score = 29.5 bits (63), Expect = 4.5
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 265 LLHAGDSSRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQSDGTPMEQSTAASSSQ 324
LLH + ST + ++ +M + AI+ NR+SN S G + ++A S Q
Sbjct: 445 LLHQRQLTEAKHSTMPHHYASQSVSTQMSTSAIAWEDNRASNSGSPGL-LPHTSATSKEQ 503
Query: 325 SPG 327
PG
Sbjct: 504 LPG 506
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 32 VDSLRTEAEKRSNVPSSSLELIHHGKILKD-KATLQECGVKSGEM 75
V++ R E S VP+S + L H G L D K TL VK ++
Sbjct: 23 VENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAYSVKENDV 67
>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/71 (23%), Positives = 32/71 (45%)
Query: 268 AGDSSRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQSDGTPMEQSTAASSSQSPG 327
+ +SSR SS+ S + S + S + + + +SN S+ S ++S+S S
Sbjct: 120 SSNSSRSSSSSSNSNSNSSSSSSSSSSSSSGSSSSSNSNSNSNSNSSSSSNSSSNSNSNS 179
Query: 328 GREDNFTTQLN 338
N ++ N
Sbjct: 180 SSSSNSSSNSN 190
Score = 29.5 bits (63), Expect = 4.5
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 271 SSRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQSDGTPMEQSTAASSSQSPGGRE 330
SS SS+ +SG S S + + S + N SSN S+ + S++ S+S S
Sbjct: 139 SSSSSSSSSSSGSSSSSNSNSNSNSNSSSSSNSSSNSNSNSSSSSNSSSNSNSSSNSSSS 198
Query: 331 DN 332
N
Sbjct: 199 SN 200
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 29.1 bits (62), Expect = 5.9
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 270 DSSRPHSSTQTSGPSRSVI--TPEMFSEAISEAINRSSNRQS-DGTPMEQSTAASSSQ-S 325
DSS SST+TS P ++V+ P ++ ++ IN S+ + S +P E+ S +
Sbjct: 2763 DSSDKASSTRTSSPFKAVLPQRPINTADEVTNLINASNLKSSLSESPAEKEQVRSPLEFD 2822
Query: 326 PGGRE 330
PG +E
Sbjct: 2823 PGPKE 2827
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 29.1 bits (62), Expect = 5.9
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 260 ESLLRLLHAGDS--SRPHSSTQTSGPSRSVITPEMFSEAISEAINRSSNRQSDGTPMEQS 317
+S+L L A D S+ + +TS +++ + + +++ + S QS P ++
Sbjct: 1401 KSILDSLEAHDENISQTIAEIKTSCRDSRIMSTDKSQKPLTKGQSVKSLTQSQNPPAQEE 1460
Query: 318 TAASSSQSPGGREDNFTTQ 336
+S SQ P +E +TQ
Sbjct: 1461 GQSSQSQEPSAQEQGRSTQ 1479
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 29.1 bits (62), Expect = 5.9
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 251 TPRSGGGSHESLLRLLHAGDSSRPHSSTQTSG-------PSRSVITPEMFSEAISEAINR 303
TPR G+ ESL R + D SR S+ G R +TP+ S+ ++++ R
Sbjct: 3026 TPRRNSGTPESLDRSMSPHDKSRSSSALSDEGFNALIKSVRRRSLTPQNDSDRSTDSLER 3085
Query: 304 SSNRQS 309
S + +S
Sbjct: 3086 SMSPES 3091
>SB_17147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 29.1 bits (62), Expect = 5.9
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 12 KVKPGPIERHKLENFGLENTVDSLRTEAEKRSN 44
K++ GP+ K+E GLE VD L + E + N
Sbjct: 166 KLEEGPVSAEKIEEVGLEKEVD-LEEDVEMKEN 197
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 29.1 bits (62), Expect = 5.9
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 253 RSGGGSHESLLRLLHAGDSSRPHSSTQTSGPSRSVITPEMFSEAISEA 300
RS GGS R + SS PHS+ + S + + TP+ S EA
Sbjct: 1679 RSNGGSAMKKKRPRMSSCSSEPHSADEASSSASTPTTPKTVSTIPEEA 1726
>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 28.7 bits (61), Expect = 7.8
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 297 ISEAINRSSNRQSDGTPMEQSTAASSSQSPGGREDN 332
+ +++ S R+SDGT +E STA S + + +++
Sbjct: 159 VQKSMEGESQRKSDGTSVENSTARSETSTTSAEQND 194
>SB_51988| Best HMM Match : bZIP_2 (HMM E-Value=7.3e-13)
Length = 244
Score = 28.7 bits (61), Expect = 7.8
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 292 MFSEAISEAINRSSNRQSDGTPMEQSTAASSSQSPGG 328
+ SE+I ++IN ++ S G+P+ + SS + GG
Sbjct: 52 LLSESIPKSINEFTSSTSRGSPVSPGSQVSSDEGRGG 88
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 28.7 bits (61), Expect = 7.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 280 TSGPSRSVITPEMFSEAISEAINRSSNRQSDGTPMEQSTAASSSQSPG 327
+S +R TP+ S A+ S ++ +G +++ + +SSQSPG
Sbjct: 28 SSSTNRGNSTPDGGSNAVDTPTEASGDKMRNGQEDKKAYSVTSSQSPG 75
>SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 28.7 bits (61), Expect = 7.8
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 19 ERHKLE-NFGLENTVDSLRTEAEKRSNVPSSSLELIHHGKILKDK 62
E+H E + L++ DSL T EK ++ ++ HH K L+D+
Sbjct: 663 EKHIQELSESLDSLQDSLATSLEKNQSLQLEQKKIAHHHKSLQDE 707
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.127 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,371,349
Number of Sequences: 59808
Number of extensions: 357589
Number of successful extensions: 858
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 37
length of query: 364
length of database: 16,821,457
effective HSP length: 83
effective length of query: 281
effective length of database: 11,857,393
effective search space: 3331927433
effective search space used: 3331927433
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)
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