Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001494-TA|BGIBMGA001494-PA|IPR005033|YEATS,
IPR002052|N-6 Adenine-specific DNA methylase
(979 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 139 1e-32
SB_20570| Best HMM Match : YEATS (HMM E-Value=1.1e-06) 81 4e-15
SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-04
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13) 42 0.002
SB_13936| Best HMM Match : ABC_tran (HMM E-Value=4.6e-14) 37 0.069
SB_18627| Best HMM Match : Histone (HMM E-Value=1.7e-30) 36 0.21
SB_30056| Best HMM Match : Linker_histone (HMM E-Value=2.4e-37) 35 0.28
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 34 0.49
SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37) 33 0.85
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 32 2.0
SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37) 32 2.0
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.6
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 31 3.4
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.4
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 31 3.4
SB_36195| Best HMM Match : Pentaxin (HMM E-Value=1.9) 31 3.4
SB_17373| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.4
SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38) 31 4.5
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1) 31 4.5
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89) 31 4.5
SB_36607| Best HMM Match : Vicilin_N (HMM E-Value=3.7) 31 4.5
SB_54212| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 6.0
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36) 31 6.0
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 31 6.0
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 31 6.0
SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14) 31 6.0
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 7.9
SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 7.9
SB_24498| Best HMM Match : Galactosyl_T_2 (HMM E-Value=0) 30 7.9
SB_12695| Best HMM Match : Linker_histone (HMM E-Value=1.6e-38) 30 7.9
SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 7.9
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 30 7.9
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 139 bits (336), Expect = 1e-32
Identities = 70/193 (36%), Positives = 108/193 (55%), Gaps = 4/193 (2%)
Query: 51 MDENPDEDNNAYITT-AISVASLLTENLLSHPFIVLRRQCQVHNNLRNYHIVPYTLLPVV 109
M P +N +T I S+L +HPF+V RRQCQV+ N + YH+ P+++ V+
Sbjct: 43 MPNEPKIENAQRLTGFGIGALSMLAAQAATHPFLVFRRQCQVNGNAQRYHVTPFSVFQVM 102
Query: 110 VRLHRRQDVTTLWKGIGSTCIVRGLNLAVEDAVAKGTGWPKEVNKCN-SVLQFVQHIALK 168
++L R+Q + LWKG GST IV +N E A++ T P++ S+ + H+ LK
Sbjct: 103 IKLERKQGASCLWKGYGSTYIVCAVNFFSEAAISAVTQLPQDKPSSEMSMSEVASHLLLK 162
Query: 169 SLSLALITPFYSASLVETVQSDIASDKPALFDVFREGFVRILEWGTPS--KGRMLPIWAI 226
L L P +ASLVETV+++ D + D F++G R++ W S GR+LP+W I
Sbjct: 163 CLGLIFSMPIAAASLVETVKTERIKDGYGVIDTFKDGLYRLVGWNRSSGRHGRLLPMWTI 222
Query: 227 VLPTVALGVSKYI 239
PT+ G+ Y+
Sbjct: 223 AAPTILHGMLHYL 235
>SB_20570| Best HMM Match : YEATS (HMM E-Value=1.1e-06)
Length = 135
Score = 81.0 bits (191), Expect = 4e-15
Identities = 31/58 (53%), Positives = 44/58 (75%)
Query: 247 IRVNFEIGHEATLKPKKTPDGFTHDWEVFVRGQEGVDISHFINKVVFHLHHTFLKPRR 304
++ E+GH A+ + K TP+GFTHDW+VFVRG + DISHF+ KV+F+LH +F P+R
Sbjct: 10 VQAKLELGHTASCRKKLTPEGFTHDWKVFVRGSDHNDISHFVEKVIFNLHESFPNPKR 67
>SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 44.8 bits (101), Expect = 3e-04
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 266 DGFTHDWEVFVRG-QEGVDISHFINKVVFHLHHTFLKPRRVV--KDPPFSIKESGYAGFT 322
D TH W V+VRG + + I ++ V F LH ++ +P +V K PPF I G+ F
Sbjct: 265 DKSTHKWMVYVRGLPDDLPIHSYVQNVWFFLHPSY-RPNDIVEIKKPPFQITRRGWGEFP 323
Query: 323 LPIEIYLKNKDEPKKITFSYNLTLQQ 348
+ ++++ + K++ + L L +
Sbjct: 324 IRVQLHFVD-SRNKRVDIIHELKLDK 348
>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
Length = 1072
Score = 42.3 bits (95), Expect = 0.002
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 491 KDEREKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANS 550
+ EREK R + K++E+ + +A R DR SP + R SP+ R +SP R+ S
Sbjct: 1005 EQEREKERERLREQREKEREETRMRARDRSGDRARSPPRGRARSKSPVSRRRASPSRSRS 1064
Query: 551 VASN 554
+ N
Sbjct: 1065 RSRN 1068
>SB_13936| Best HMM Match : ABC_tran (HMM E-Value=4.6e-14)
Length = 441
Score = 37.1 bits (82), Expect = 0.069
Identities = 17/69 (24%), Positives = 36/69 (52%)
Query: 895 KVQDNGVSSSLGEDAELGDISPDYMEQLRDLQQRIMKIKNNEDLERVVNLIAETGRYEVT 954
K++ NG++ + +D L DI M ++ + + +IK ED+ R++ TG+ +V
Sbjct: 251 KMKANGLTDKVVKDKHLQDILELDMSAMKFMMKCFPEIKEQEDMRRIIGRYGLTGKQQVQ 310
Query: 955 TQTFDFDLC 963
++ +C
Sbjct: 311 DRSIRLKMC 319
>SB_18627| Best HMM Match : Histone (HMM E-Value=1.7e-30)
Length = 279
Score = 35.5 bits (78), Expect = 0.21
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 492 DEREKNRPDKVKTP-SKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANS 550
D+ P K K P +K + K+ A+K+ + A+ + KK P + ++ A
Sbjct: 185 DKAAVENPKKAKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKAAKK 244
Query: 551 VASNKEEYKPARQNLELLDHKKP 573
A+ K KPA++ KKP
Sbjct: 245 PAAKKAAAKPAKKPAAKKATKKP 267
>SB_30056| Best HMM Match : Linker_histone (HMM E-Value=2.4e-37)
Length = 184
Score = 35.1 bits (77), Expect = 0.28
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 498 RPDKVKTP-SKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANSVASNKE 556
+P K K P +K + K+ A+K+ + A+ + KK P + ++ A A+ K
Sbjct: 96 KPKKAKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKAAKKPAAKKA 155
Query: 557 EYKPARQNLELLDHKKP 573
KPA++ KKP
Sbjct: 156 AAKPAKKPAAKKATKKP 172
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 34.3 bits (75), Expect = 0.49
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 493 EREKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANSVA 552
E+E +KVK P K ++ K K SK+ + P SP K + +ST + ++++ +
Sbjct: 111 EKEAAEEEKVKKPKKSRDGEKTKKSKKVTSEPKSPKVKKSK-----DKSTKTTKKSDAKS 165
Query: 553 SNKEEYKP 560
K+ P
Sbjct: 166 PKKDAKSP 173
>SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)
Length = 184
Score = 33.5 bits (73), Expect = 0.85
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 498 RPDKVKTP-SKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANSVASNKE 556
+P K K P +K + K+ A+K+ + A+ + KK P + ++ A+ K
Sbjct: 96 KPKKAKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKATKKPAAKKA 155
Query: 557 EYKPARQNLELLDHKKP 573
KPA++ KKP
Sbjct: 156 AAKPAKKPAAKKAAKKP 172
Score = 30.7 bits (66), Expect = 6.0
Identities = 16/73 (21%), Positives = 32/73 (43%)
Query: 491 KDEREKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANS 550
K K P K ++ K+ A+K+P+ + A+ K+ + + ++ A
Sbjct: 112 KKPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKATKKPAAKKAAAKPAKKPAAKKAAKK 171
Query: 551 VASNKEEYKPARQ 563
A+ K KPA++
Sbjct: 172 PAAKKAVKKPAKK 184
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 32.3 bits (70), Expect = 2.0
Identities = 35/160 (21%), Positives = 54/160 (33%), Gaps = 13/160 (8%)
Query: 427 MRNSSFVNLFGPPIHKPA---KVSPDPKKIEKVTPPIXXXXXXXXXXXXXXXXXXXXXXX 483
+RN F+ + P P + P P + + P +
Sbjct: 827 LRNRRFLRAYTPATPTPDHQYRTPPPPPRSPECQPTLNSSPSPPTGSGPLTGNPHVTTQL 886
Query: 484 XXXXXXTKDEREKNRPDKVKT-----PSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPI 538
++ ++ +RP K KT PSK Q K K RPS + K+
Sbjct: 887 SHGYVESRKTKQASRPSKTKTKEAARPSKSQASRKTKQVARPSKPQDQASSKTKQDQDQA 946
Query: 539 GRST---SSPLRANSVASNKEEYKPARQNLELLDHKKPRP 575
R T + P + AS K K A + + D +PRP
Sbjct: 947 SRKTKQVARPSKPQDQASRKT--KQASRASKQQDQARPRP 984
>SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37)
Length = 184
Score = 32.3 bits (70), Expect = 2.0
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 498 RPDKVKTP-SKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANSVASNKE 556
+P K K P +K + K+ A+K+ + A+ + KK P + ++ A+ K
Sbjct: 96 KPKKAKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKATKKPAAKKA 155
Query: 557 EYKPARQNLELLDHKKP 573
KPA++ K+P
Sbjct: 156 AAKPAKKPAAKKAAKRP 172
Score = 30.3 bits (65), Expect = 7.9
Identities = 16/73 (21%), Positives = 32/73 (43%)
Query: 491 KDEREKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANS 550
K K P K ++ K+ A+K+P+ + A+ K+ + + ++ A
Sbjct: 112 KKPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKATKKPAAKKAAAKPAKKPAAKKAAKR 171
Query: 551 VASNKEEYKPARQ 563
A+ K KPA++
Sbjct: 172 PAAKKAVKKPAKK 184
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 31.9 bits (69), Expect = 2.6
Identities = 16/74 (21%), Positives = 38/74 (51%)
Query: 490 TKDEREKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRAN 549
++ R ++R + + S+D+E+ +E+ S+R D+ S + ++R S + SP +
Sbjct: 221 SRRSRSRSRDRRPRRRSRDRERSRERRSRRSRDKSRSREKSRERGGSRGRSAEKSPEKQR 280
Query: 550 SVASNKEEYKPARQ 563
+ ++ P R+
Sbjct: 281 DKSDDRRSRSPERK 294
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 31.5 bits (68), Expect = 3.4
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 492 DEREKN-RPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCL----SPIGRSTSSPL 546
D KN +PDK TP K +++K + P +PA P K L SP G+ + P
Sbjct: 297 DRSMKNSKPDKPATPDKPDKRVKPVS--MPESKPAGPKKPDKLILPDRSSPTGKPSRVPT 354
Query: 547 RANSVASNK 555
+ + S +
Sbjct: 355 PSKATPSKR 363
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 31.5 bits (68), Expect = 3.4
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 491 KDEREKNRPDKVKTPSKDQEKIKEKASKRPSDRPAS------PDAVKKRCLSPIGRSTSS 544
K ER++ + +K + S+ +E+ +E++ R DR +S D ++R S +
Sbjct: 213 KSERKREKEEKKRDKSEKRERSRERSKDRKKDRDSSKHRDKEKDRSRERDRSGSKHRSKD 272
Query: 545 PLRANSVASNKEEYKPAR 562
R +S S++ +++P R
Sbjct: 273 RTRRDSGDSHERQHRPQR 290
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 31.5 bits (68), Expect = 3.4
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 491 KDEREKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANS 550
K+ER+K R +K K K++EK KE+ ++ DR S K+R RS S+ + S
Sbjct: 635 KEERDKER-EKEKEKEKEREKEKEREREKERDRDKSSHK-KRRHKRSRSRSRSASTASES 692
>SB_36195| Best HMM Match : Pentaxin (HMM E-Value=1.9)
Length = 192
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 235 VSKYISHVRMSPIRVNFEIGHEATLKPKKTPDGFTHDWEVFVRGQEGVDISH 286
V+ Y ++ R +FEI +T KP+ P+G T D+ V + Q H
Sbjct: 98 VNWYEIERKLEQRRNDFEITKPSTCKPQSAPEGTTRDYPVIAKYQPWTQSRH 149
>SB_17373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 31.5 bits (68), Expect = 3.4
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 491 KDEREKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANS 550
K +K K K+P K K K+ K+ + +PA+ + + ++ A
Sbjct: 175 KPAAKKPAAKKAKSPKKPAPKKATKSPKKAAKKPAAKKPAAAKPKKAAAKKPAAKKAAKK 234
Query: 551 VASNKEEYKPARQ 563
A+ K KPA+Q
Sbjct: 235 PAAKKAAKKPAKQ 247
>SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38)
Length = 234
Score = 31.1 bits (67), Expect = 4.5
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 490 TKDEREKNRPDKVKTPSKDQEKIKEKASKRPSDRPAS-PDAVKKRCLSPIGRSTSSPLRA 548
+K + +P K+P K K K+ K+ + +PA+ A KK P + ++ A
Sbjct: 152 SKKPKAAKKPAAKKSPKKAAAKKPSKSPKKAAKKPAAKKPAAKKAAKKPAAKKAAAK-PA 210
Query: 549 NSVASNKEEYKPARQNLELLDHKK 572
A+ K KPA + KK
Sbjct: 211 KKPAAKKAAKKPAAKKAAKKPAKK 234
Score = 30.7 bits (66), Expect = 6.0
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 498 RPDKVKTPSKDQEKIKEKASKRPSDRPASPD----AVKKRCLSPIGRSTSSPLRANSVAS 553
+P K K P+ + K +K + + S + A+ + KK P + ++ A A+
Sbjct: 143 KPKKAKKPASKKPKAAKKPAAKKSPKKAAAKKPSKSPKKAAKKPAAKKPAAKKAAKKPAA 202
Query: 554 NKEEYKPARQNLELLDHKKP 573
K KPA++ KKP
Sbjct: 203 KKAAAKPAKKPAAKKAAKKP 222
>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
Length = 566
Score = 31.1 bits (67), Expect = 4.5
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 491 KDEREKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANS 550
K++ KN+P K KT +K Q++ K+ A R + RP +A +K S RS +A
Sbjct: 150 KNKPSKNKPSKNKT-TKPQDQDKQDARPRQA-RPR--EASRKTKTSKTKRSKPQDKQAER 205
Query: 551 VASNKEEYKPARQNLELLDHKKPRP 575
AS K +Q K +P
Sbjct: 206 QASRKTSKPKDKQAARQASRKTSKP 230
>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
Length = 1354
Score = 31.1 bits (67), Expect = 4.5
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 338 ITFSYNLTLQQNGFLKDRYIFKNPSDEFSKKL 369
I F +T+ NGFL R I+KNPS EF K L
Sbjct: 46 IVFISVITILANGFLL-RAIYKNPSGEFRKPL 76
>SB_36607| Best HMM Match : Vicilin_N (HMM E-Value=3.7)
Length = 567
Score = 31.1 bits (67), Expect = 4.5
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 494 REKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKK 532
R K +P K SK QEK K+ A KRPS A +K
Sbjct: 517 RCKTKPSCKKKTSKPQEKDKQAARKRPSQAARKRQASRK 555
>SB_54212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 30.7 bits (66), Expect = 6.0
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 330 KNKDEPKKITFSYNLTLQQNGFLKD-RYIFKNPSDEFSKKLLKG 372
KNK P+KI F +++TL +N + D R+ + N S+ +G
Sbjct: 174 KNKGYPRKINFPWHMTLSKNKQVVDGRWFWSNKKGRKSENTTRG 217
>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
Length = 650
Score = 30.7 bits (66), Expect = 6.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 493 EREKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTS 543
++ +P K TP K ++ +K+ K+ S +PA+ KK P + +S
Sbjct: 594 KKAAKKPAKKSTPKKAKKPAAKKSPKKLSKKPAAKKTPKKVAKKPAAKKSS 644
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 30.7 bits (66), Expect = 6.0
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 490 TKDEREKNRPDKVKT-PSKDQEKIKEKASKRPSDRP--ASPDAVKKRCLSPIGRSTSSPL 546
T R RP K T P +E+ +E+ +RP+ +P A P +K+R + + PL
Sbjct: 416 TIKRRPTERPTKKTTKPLLPEEEEEEEEEERPTPKPTKAKPTTIKRRPTEIPTKKPTKPL 475
Query: 547 RANSVASNKEEYKPARQ 563
+ +P R+
Sbjct: 476 LPEGEGEERATPRPTRK 492
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 30.7 bits (66), Expect = 6.0
Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 2/131 (1%)
Query: 444 AKVSPDPKKIEKV--TPPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKDEREKNRPDK 501
A SP KK V TPP K+E+EK R +
Sbjct: 276 AAPSPPDKKQSSVCHTPPKTPSSKTTPADAETKTSPSTTSPQTNKALRQKEEKEKQRLEA 335
Query: 502 VKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANSVASNKEEYKPA 561
K++ + K+K + ++ A + +K L R L ++ K
Sbjct: 336 KAAKEKERLEAKQKKEQERLEKQAEKEKKEKERLEKKQREEKDRLEKKEKKEEEKRKKEE 395
Query: 562 RQNLELLDHKK 572
N ++ + KK
Sbjct: 396 EINAKIEEKKK 406
>SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14)
Length = 908
Score = 30.7 bits (66), Expect = 6.0
Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 12/141 (8%)
Query: 310 PFSIKESGYAGFTLPIEIYLKNKDEPKKITFSYNLTLQQNGFLKDRYIFKNPSDEFSKKL 369
PF++K + ++ + K++ + +T SY + L NG I+ + S++ +
Sbjct: 335 PFAVKSTEVTSRSISLTWSSPVKEDGELMTTSYKIELVTNGM-----IYTSSSNQLAVTG 389
Query: 370 LKGGGIPCTNSELYTNPDQESRSRDSFTDEKHLVSKPKLXXXXXXXXXXXXXXXXVPMRN 429
LK P T SR+ +++DE H+V++ + P N
Sbjct: 390 LK----PYTGYRFRVKA-VSSRADGAWSDEAHIVTEQEASLLVRPLETTPAPAPTTP--N 442
Query: 430 SSFVNLFGPPIHKPAKVSPDP 450
S GPPI P + P
Sbjct: 443 SPATPASGPPIRTPIPLRETP 463
>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 490 TKDEREKNRPDKVKTPSKDQEKIKEKASK 518
T+ E+EK DK KTPS+ + K KA+K
Sbjct: 998 TQREQEKQHVDKGKTPSESESKPTTKAAK 1026
>SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 30.3 bits (65), Expect = 7.9
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 503 KTPSKDQEKIKEKAS---KRPSDRPASPDAVKKRCLSPIGRSTSSPLRANSVASNKEEYK 559
K P+K K K+KA+ K+P+ +P KK+ + + SP +A S K+ K
Sbjct: 120 KKPAKKAVKPKKKATPKKKKPAAKPKKKATPKKKAAAKKTKKAKSPKKAKSPKKAKKPKK 179
Query: 560 -PARQ 563
PA++
Sbjct: 180 SPAKK 184
>SB_24498| Best HMM Match : Galactosyl_T_2 (HMM E-Value=0)
Length = 446
Score = 30.3 bits (65), Expect = 7.9
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
Query: 493 EREKNRPDKVKT---PSKDQEKIKEKASKRPS 521
ER+ + D+V+T P ++QEK +EKAS++PS
Sbjct: 162 ERDHSEGDEVETTAPPVEEQEKEEEKASEKPS 193
>SB_12695| Best HMM Match : Linker_histone (HMM E-Value=1.6e-38)
Length = 184
Score = 30.3 bits (65), Expect = 7.9
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 491 KDEREKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANS 550
K +K K K+P K K K+ K+ + +PA+ + + ++ A
Sbjct: 112 KPAAKKPAAKKAKSPKKSAPKKATKSPKKTAKKPAAKKPAAAKPKKAAAKKPAAKKAAKK 171
Query: 551 VASNKEEYKPARQ 563
A+ K KPA++
Sbjct: 172 PAAKKAAKKPAKK 184
>SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 30.3 bits (65), Expect = 7.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 492 DEREKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKK 532
D+ E + K +++ K EK KRP+ R A PD KK
Sbjct: 87 DQDEDEETNSFKITAEEIAKNLEKYKKRPAKRQADPDEKKK 127
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 30.3 bits (65), Expect = 7.9
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 494 REKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANSVAS 553
RE+ R K + K +E EK +K+ S ++R + GRS + A+ ++
Sbjct: 535 REEERRQKREEARKRRE---EKLAKKGPTTSTSSSRKRRRKFNRNGRSAAIKAAASKLSE 591
Query: 554 NKEEYKPARQN-LELLDHK 571
N++E QN +EL D K
Sbjct: 592 NEDETTKGSQNEVELSDAK 610
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,125,023
Number of Sequences: 59808
Number of extensions: 1102982
Number of successful extensions: 2870
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2789
Number of HSP's gapped (non-prelim): 89
length of query: 979
length of database: 16,821,457
effective HSP length: 89
effective length of query: 890
effective length of database: 11,498,545
effective search space: 10233705050
effective search space used: 10233705050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 65 (30.3 bits)
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