Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001494-TA|BGIBMGA001494-PA|IPR005033|YEATS,
IPR002052|N-6 Adenine-specific DNA methylase
(979 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch... 81 6e-16
SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subu... 52 3e-07
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 2.4
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 28 5.5
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 28 7.3
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 28 7.3
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 28 7.3
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 27 9.6
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 9.6
>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 81.4 bits (192), Expect = 6e-16
Identities = 34/89 (38%), Positives = 52/89 (58%)
Query: 262 KKTPDGFTHDWEVFVRGQEGVDISHFINKVVFHLHHTFLKPRRVVKDPPFSIKESGYAGF 321
+K P TH W +FV G +G DIS ++ KVVF LH T+ P R ++ PPF + E+G+ F
Sbjct: 31 EKAPTDHTHTWRIFVEGVDGEDISKWVRKVVFKLHDTYNNPTRTIESPPFEVIETGWGEF 90
Query: 322 TLPIEIYLKNKDEPKKITFSYNLTLQQNG 350
+ + I+ + K +TF ++L L G
Sbjct: 91 DIMVRIFFAPEAHEKALTFYHHLKLHPYG 119
>SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subunit
Tfg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 241
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 280 EGVDISHFINKVVFHLHHTFLKPRRVVKDPPFSIKESGYAGFTLPIEIYLKNKDEPKKIT 339
E D S F+++V + LH TF P R ++ PPF IKE G+ F + I IY +K +
Sbjct: 47 EETDAS-FVDRVTYKLHPTFQNPTRTIRKPPFQIKEQGWGEFEMEIIIYYADKGGEHR-- 103
Query: 340 FSYNLTLQQNGFLKD 354
F + L QQ + +D
Sbjct: 104 FLHYLHFQQEHYHED 118
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 725 KVIHRITPIPKERLLPEPTSPISIDTASQCSSKSGVAKPMLLEGEEINSSQSDSENSVIC 784
+V +R+ + +LLP PT+P+ + Q + S + ++ SQ D E ++
Sbjct: 393 RVENRLRSLEGGKLLPLPTAPVQ-QSKVQINGTSAYSTATDAVTKDAEESQEDVEMDIVI 451
Query: 785 EDDEPKIVKIEPPSPEIVK 803
E + K K++ E K
Sbjct: 452 EKKKKKSSKLKEADGESSK 470
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 149 PKEVNKCNSVLQFVQ-HIALKSLSLALITPFYSASLVETVQSDIASDKPALFDVF 202
P+ K NS +V H+ A TPF+S ++V +QS+I + A FD F
Sbjct: 360 PESTVKENSTRPYVNSHLVANDKITA--TPFHSEAVVSPLQSNIRNSDIAEFDEF 412
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 73 LTENLLSHPFIVLRRQCQVHNNLRNYHIVPYTLLPVVVRLHRRQ 116
L ++ S P V+ Q ++HN+ + + LLP++ LH ++
Sbjct: 1046 LIKHFCSEPQKVVNSQLELHNSAYSLDAISQNLLPMLKDLHSKE 1089
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 7.3
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 495 EKNRPDKVKTP-------SKDQEKIKE-KASKRPSDRPASPDAVKKRCLSPIGRSTSSPL 546
+K+ +KV+TP SK +E +E K SK P +P +P A K S R +
Sbjct: 418 QKHNEEKVETPKPEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSK-KRDEDNHQ 476
Query: 547 RANSVASNKEEYKPARQN 564
+ +V K E P ++
Sbjct: 477 KEETVTQPKREKTPVEKS 494
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 495 EKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSP--IGRSTSSPLRANSVA 552
++ P++++T KD++ +E + + +PA+P K+ + +G S + + +
Sbjct: 112 QRESPEEIETRKKDRKNRREMLKRTSALQPAAPKPTHKKPVPKRNVGAERKSTINEDLLP 171
Query: 553 SNK 555
NK
Sbjct: 172 PNK 174
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 922 LRDLQQRIMKIKNNEDLERVVNLIAET 948
L++++QR+ IKN E + + + +A+T
Sbjct: 34 LKEIEQRLKSIKNIEKITKTIKTVAQT 60
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 651 EKTINKFSIENLRKTPPPEIDERSETPKKDK 681
+KT+ + E + PP ++ E +E PKK K
Sbjct: 734 DKTLQHVASEIVPNLPPADVGELNEEPKKSK 764
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,877,152
Number of Sequences: 5004
Number of extensions: 157488
Number of successful extensions: 372
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 10
length of query: 979
length of database: 2,362,478
effective HSP length: 80
effective length of query: 899
effective length of database: 1,962,158
effective search space: 1763980042
effective search space used: 1763980042
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)
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