Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001494-TA|BGIBMGA001494-PA|IPR005033|YEATS,
IPR002052|N-6 Adenine-specific DNA methylase
(979 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 69 2e-11
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 34 0.64
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 33 1.1
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 32 2.6
09_02_0468 - 9608922-9610061 31 4.5
12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522... 30 7.9
06_02_0096 - 11683368-11684581,11684705-11684773,11685356-116854... 30 7.9
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510... 30 7.9
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 68.5 bits (160), Expect = 2e-11
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 262 KKTPDGFTHDWEVFVRGQEGVDISHFINKVVFHLHHTFLKPRRVVKDPPFSIKESGYAGF 321
KK + +H W V+VR D+S + +VVF LH +F P RVV+ PPF + ESG+ F
Sbjct: 99 KKASEYNSHKWTVYVRSATNEDLSVIVKRVVFQLHPSFTNPTRVVEQPPFELSESGWGEF 158
Query: 322 TLPIEIYLKNKDEPKKITFSYNLTL 346
+ I +Y + K++ + L L
Sbjct: 159 EIAITLYFHSDVCEKRLDLFHQLKL 183
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 33.9 bits (74), Expect = 0.64
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 492 DEREKNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANSV 551
+E K +P K P K + KE++S SD +S D K+ P+ R + L NS
Sbjct: 84 EEEVKAQPKKTVQPKKAAQPAKEESSDDSSDDSSSDDEPAKK---PVARPNKAALSTNSS 140
Query: 552 ASN 554
+S+
Sbjct: 141 SSD 143
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 33.1 bits (72), Expect = 1.1
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 498 RPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLRANSVASNKEE 557
RP +P Q K + + RP P SP SP GR+ + P + + N+
Sbjct: 553 RPTGSSSPRTVQRKAESERRSRPPVSPKSPSKKSSEAASPGGRTRTKPSQGKNHRDNEVS 612
Query: 558 YKPARQ-------NLELLDHKKP 573
P + ++ ++D +KP
Sbjct: 613 KSPRSRISMVKEIDISIMDFQKP 635
>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 31.9 bits (69), Expect = 2.6
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 747 SID-TASQCSSKSGVAKPMLLEGEEINSSQSDSENSVICE-----DDEPKIV 792
S+D T +QC + + P+ LEG+ I SEN+V+ E DEP +V
Sbjct: 2542 SLDLTKTQCENSEDIVGPVDLEGDWITEDDFGSENTVLAERIGATGDEPHMV 2593
>09_02_0468 - 9608922-9610061
Length = 379
Score = 31.1 bits (67), Expect = 4.5
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 491 KDEREKNRPDKVKTPSKDQEKIKEKASKRPSDR--PASPDAVKKRCLSPIGRSTSSPLRA 548
++E E P V+ P I A+ +P +R P P +RCL + + S A
Sbjct: 268 QEEEEPKEPVPVRRPP-----IAVPAAPQPENRVAPPPPPPRARRCLRALMMESGSDTEA 322
Query: 549 NSVASNKEEYKPARQNLE-LLDHKKPRP 575
K + KP+ + + DHK P P
Sbjct: 323 APKPKTKPKPKPSSCRFQCVADHKPPPP 350
>12_02_1096 +
26050224-26051058,26051599-26051831,26051940-26052230,
26052860-26052988,26053082-26053255,26053334-26053547,
26053881-26053968,26054195-26054239,26056969-26057015,
26057441-26057727,26057812-26058051,26058141-26058257
Length = 899
Score = 30.3 bits (65), Expect = 7.9
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 490 TKDEREKNRPDKVKTPSKDQE--KIKEKASKRPSDRPASPDAVKKRCLSPIGRSTSSPLR 547
+KD+ +K++ K K KD+E K K + R D+ D KK+ S G S
Sbjct: 797 SKDKEKKHKKHKDKDRDKDKEHKKHKHRHKDRSKDKDKDKDKDKKKDKS--GHHDSGGDH 854
Query: 548 ANSVASNKEEYKPARQNLELLDHKKPR 574
+ K +++ + ++ HKK +
Sbjct: 855 SKKHHEKKRKHEGMEDSADVHKHKKSK 881
>06_02_0096 -
11683368-11684581,11684705-11684773,11685356-11685412,
11685553-11685609,11685758-11685817,11686770-11686893
Length = 526
Score = 30.3 bits (65), Expect = 7.9
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 207 VRILEWGTPSKGRMLPIW---AIVLPTVALGVSKYISHVRMSPIRVNFEIGHEATLKPKK 263
V+I+ WG G P W +P + L +Y + +R + + H P
Sbjct: 429 VQIIPWG----GMKWPCWYDYGEPVPAMGLRYVEYEVAANETTLRERYPMDHPVFADPVS 484
Query: 264 TP-DGFTHDWEVFVRGQE-GVDISHF 287
GF H W F+ GQ +D++ F
Sbjct: 485 IHRKGFNHLWSTFLNGQNLTLDVNRF 510
>04_04_1696 +
35448667-35449641,35449726-35450562,35450667-35451001,
35451371-35451497,35451594-35451752,35451872-35453053,
35453164-35453424,35453513-35453761
Length = 1374
Score = 30.3 bits (65), Expect = 7.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 897 QDNGVSSSLGEDAELGDISPDYMEQLRDLQQRIMKIKNNEDLER 940
QD S D D S +YM+QL DLQ+++ K N+ + +
Sbjct: 480 QDTETSQETASDTLTKDHSCEYMDQLNDLQEQVF-AKTNQKMSQ 522
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,997,303
Number of Sequences: 37544
Number of extensions: 930607
Number of successful extensions: 1893
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1884
Number of HSP's gapped (non-prelim): 12
length of query: 979
length of database: 14,793,348
effective HSP length: 89
effective length of query: 890
effective length of database: 11,451,932
effective search space: 10192219480
effective search space used: 10192219480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 65 (30.3 bits)
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