GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001494-TA|BGIBMGA001494-PA|IPR005033|YEATS,
IPR002052|N-6 Adenine-specific DNA methylase
         (979 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    28   0.43 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   9.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   9.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 0.43
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 496 KNRPDKVKTPSKDQEKIKEKASKRPSDRPASPDAVKKRCLSPI---GRSTSSPLRANSVA 552
           K++P        D+E I    S        SP++  ++C+SPI   G S S      S  
Sbjct: 556 KSKPPVATMYGSDEEIIN---SSNDEGGKTSPNSAVRKCMSPINGSGASGSGSAENLSSG 612

Query: 553 SNKEEYKPARQN 564
           SN +    +R+N
Sbjct: 613 SNNQTSSASREN 624


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/40 (20%), Positives = 22/40 (55%)

Query: 911 LGDISPDYMEQLRDLQQRIMKIKNNEDLERVVNLIAETGR 950
           L +   + ++ L   ++++    NN+D+E+ +N +   G+
Sbjct: 288 LEEFERNRLQLLESFKRKVNFYPNNQDIEKFLNYLKRGGK 327


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 947 ETGRYEVTTQTFDFDLCLLDRSTVQQLIQ 975
           E G YEV    +DF   +LDR+ + + I+
Sbjct: 255 EVGFYEVEGIGYDFIPTVLDRNVIDKWIK 283


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,309
Number of Sequences: 429
Number of extensions: 9769
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 4
length of query: 979
length of database: 140,377
effective HSP length: 64
effective length of query: 915
effective length of database: 112,921
effective search space: 103322715
effective search space used: 103322715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)