Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001493-TA|BGIBMGA001493-PA|IPR002035|von Willebrand
factor, type A, IPR013608|VWA N-terminal, IPR004010|Cache
         (1174 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61450.1 68416.m06882 syntaxin 73 (SYP73) identical to syntax...    32   2.6  
At5g09930.1 68418.m01148 ABC transporter family protein                31   4.6  
At5g46500.1 68418.m05726 expressed protein                             31   6.0  
At3g61180.1 68416.m06847 zinc finger (C3HC4-type RING finger) fa...    31   6.0  
At3g14570.1 68416.m01845 glycosyl transferase family 48 protein ...    31   6.0  
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains...    31   6.0  

>At3g61450.1 68416.m06882 syntaxin 73 (SYP73) identical to syntaxin
           73 (AtSYP73) (Swiss-Prot:Q94KK5) [Arabidopsis thaliana]
          Length = 263

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 97  SEVFFEIESKLVKREELLSAFSDAMMVARNGTALVNKAADALEDLLTRRVKAAENIMRKA 156
           S V + +E+ L K E+L S  + A  VA N      KA      LL    K     ++K 
Sbjct: 41  SAVEYALETVLQKTEDLSSETNKAKAVAMNAEIRRTKAR-----LLEGIPKLQRLSLKKV 95

Query: 157 EELDKDETPPPDNYVFDHSVDLDKIKEKKIPNQKGWFMPQNCTNLQ 202
           + L K+E    ++ V      ++ I E   P   GW    + +N++
Sbjct: 96  KGLSKEELDARNDLVLSLRDKIEAIPESSAPVVGGWEASTSYSNIR 141


>At5g09930.1 68418.m01148 ABC transporter family protein 
          Length = 678

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 101 FEIESKLVKREELLSAFSDAMMVAR---NGTALVNKAADALEDLLTRRVKAAENIMRKAE 157
           FE+      +EE +  F + M +AR   N    + +A D LE L+ + +   + + R+A+
Sbjct: 156 FEVSMGKTVKEEFMCTFKEEMEIARKLENLQKAIEEAVDDLE-LMGKLLDEFDLLQRRAQ 214

Query: 158 ELDKD 162
           E+D D
Sbjct: 215 EVDLD 219


>At5g46500.1 68418.m05726 expressed protein
          Length = 417

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 600 YPVNRLLGVAGVDIPIDHLKLILPYHQLGAGGSIILVDHRGNVVLHDNLKPTF 652
           Y   R  GV+ + IP+ HL L  P+ +   G  +  V H  N+ +    K  F
Sbjct: 102 YFTYRTTGVSSLTIPLLHLPLSQPFFRFRVGALVTNVKHGKNIKVKCEFKDRF 154


>At3g61180.1 68416.m06847 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RNF6 protein [Mus
           musculus] GI:20530241; contains Pfam profile PF00097:
           Zinc finger, C3HC4 type (RING finger)
          Length = 379

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 431 DNYTDLVRHLDPGNNIRLFVFWLHDRYGLRDDTRRLAE 468
           D+ T   +HL+  N +  FV+W+   Y +  DT  LA+
Sbjct: 178 DHGTSFTKHLESANTMFSFVWWIIGFYWVTADTEALAQ 215


>At3g14570.1 68416.m01845 glycosyl transferase family 48 protein
           contains similarity to glucan synthases
          Length = 1973

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 404 LLRKQRLIRDRPKSCQQAIVLLTDSMYDNYTDLVRHLDPGNNIRL 448
           ++R+ +     PKS  +A+  L    + NYT+  + L   NNIRL
Sbjct: 270 IIRQPQKQSSAPKSGDEAVDALMKKFFKNYTNWCKFLGRKNNIRL 314


>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family associated with
           various cellular activities (AAA)
          Length = 636

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 690 RNLIIDKETGNMTMYAKNIFEDGMRATLENRQYFW---RRVLDHYTVVVALPNPDAHWAG 746
           R L+ D+    MT+        G+  T E  +  W    R+L   +++         WAG
Sbjct: 271 RTLLTDRSKLIMTVGGVTALAAGVYTTREGARVTWGYINRILGQPSLIRESSMGRFPWAG 330

Query: 747 SESQFTMKLAEAA 759
           S SQF  KL+ AA
Sbjct: 331 SVSQFKNKLSTAA 343


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,706,131
Number of Sequences: 28952
Number of extensions: 1036526
Number of successful extensions: 2472
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2468
Number of HSP's gapped (non-prelim): 7
length of query: 1174
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1085
effective length of database: 9,493,832
effective search space: 10300807720
effective search space used: 10300807720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)