GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001493-TA|BGIBMGA001493-PA|IPR002035|von Willebrand
factor, type A, IPR013608|VWA N-terminal, IPR004010|Cache
         (1174 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    26   1.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    26   1.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   5.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   5.3  

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 786 SREAEVLHFIRRRSDEPNFAMKKLNHIFSPIPPLLLE-KTYQCDEGLMARLCKDAIATDK 844
           S+ A +   +R  S E  F     +  FS    +    +T+  +     RLCK A +   
Sbjct: 32  SQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSS 91

Query: 845 WAREHEHPHRARDCSTCELGSITTFFASENL 875
              +H   H       C+L  +  F  S NL
Sbjct: 92  TLTKHLRIHSGEKPYECKL-CLLRFSQSGNL 121


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 786 SREAEVLHFIRRRSDEPNFAMKKLNHIFSPIPPLLLE-KTYQCDEGLMARLCKDAIATDK 844
           S+ A +   +R  S E  F     +  FS    +    +T+  +     RLCK A +   
Sbjct: 288 SQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSS 347

Query: 845 WAREHEHPHRARDCSTCELGSITTFFASENL 875
              +H   H       C+L  +  F  S NL
Sbjct: 348 TLTKHLRIHSGEKPYECKL-CLLRFSQSGNL 377


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 868 TFFASENLTLGSNIYREHVPVSQQWLTAARALTSPDKGIIG 908
           TF  S NLT+        +PVS + L +  A    D   IG
Sbjct: 125 TFHTSSNLTVSGLRCVNGIPVSSKTLASQSAYVQQDDLFIG 165


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 868 TFFASENLTLGSNIYREHVPVSQQWLTAARALTSPDKGIIG 908
           TF  S NLT+        +PVS + L +  A    D   IG
Sbjct: 125 TFHTSSNLTVSGLRCVNGIPVSSKTLASQSAYVQQDDLFIG 165


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,429
Number of Sequences: 317
Number of extensions: 10864
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 4
length of query: 1174
length of database: 114,650
effective HSP length: 64
effective length of query: 1110
effective length of database: 94,362
effective search space: 104741820
effective search space used: 104741820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)