GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001493-TA|BGIBMGA001493-PA|IPR002035|von Willebrand
factor, type A, IPR013608|VWA N-terminal, IPR004010|Cache
         (1174 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    33   0.31 
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    31   1.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    31   1.2  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    30   2.2  
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    29   3.8  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    29   5.0  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    28   6.7  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    28   6.7  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    28   6.7  
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           28   8.8  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   8.8  

>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 13/41 (31%), Positives = 26/41 (63%)

Query: 380 MEELREYTKVNETKVDYALKYAIKLLRKQRLIRDRPKSCQQ 420
           +EEL E+ K ++ +++ AL Y  +L + + L+ +R  + QQ
Sbjct: 191 LEELEEHNKTSQNRMEEALNYLKQLQKNEPLVHERSHTFQQ 231


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 440 LDPGNNIRLFVFWLHDRYGLRDDTRRLAEWLSCARDGYF--AELITHADVTEQVMS 493
           L PG ++  FV W    +GL D        ++  +  YF    +I++ADVT  + S
Sbjct: 240 LAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINS 295


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 27/141 (19%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 21   SVKHKNVLQNRTVAEVKNSLEKHEDALSEVLKHKTGVNPIKITNVTQAXXXXXXXXXXXI 80
            ++K +N+ Q++ +  VK+ L+   + LS+  K +  +  +K  N                
Sbjct: 959  NLKEENMSQSQAITSVKSKLD---ETLSKSSKLEADIEHLK--NKVSEVEVERNALLASN 1013

Query: 81   LRMISTKSIENWAQRLSEVFFEIESKLVKREELLSAFSDAMMVARNGTALVNKAADALED 140
             R++    ++N  + ++ +  EIE K  + ++L S  S       N   + ++   +LED
Sbjct: 1014 ERLMD--DLKNNGENIASLQTEIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLED 1071

Query: 141  LLTRRVKAAENIMRKAEELDK 161
               +     +N+ +  +E D+
Sbjct: 1072 KTNQLKYIEKNVQKLLDEKDQ 1092


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 440 LDPGNNIRLFVFWLHDRYGLRDDTRRLAEWLSCARDGYF--AELITHADVTEQVMS 493
           L PG ++  FV W    +GL D         +  +  YF    +I++ADVT  + S
Sbjct: 240 LAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINS 295


>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 187 PNQKGWFMPQNCTNLQKVPLNE-SNHFDGKVSLQT 220
           P +   FM    +N+Q  P NE SN F+GK +  T
Sbjct: 118 PEESKMFMKDTLSNIQAHPFNEYSNQFEGKNATYT 152


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 859 STCELGSITTFFASENLTLGSNIYREHVPVSQQWL 893
           S C   ++ +F    NL + S I+ E +P S QWL
Sbjct: 173 SICVFDALWSFGVGGNLPVDSAIFLEALPSSHQWL 207


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 190  KGWFMPQNCTNLQKVPLNESNHFDGKVSLQTSSVYVSLEVFECDPKVMKHIYWTEGLLST 249
            KGW +      +     + S   + K++  T + Y S E  + D KV   +  TEGLLS+
Sbjct: 1261 KGWVITDEYDMMLLARKDGSGVLEPKIAANTVNQYPS-EWEKIDLKVFDDLETTEGLLSS 1319

Query: 250  FKKN 253
            +  N
Sbjct: 1320 YCSN 1323


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 247 LSTFKKNYAQDATTDFQYFCSAKGFLRHY--PAALWDDMHQLKLNTDDVYDCRL 298
           L TF+K      +     F ++  +++    P  LW++M QL L ++D   C+L
Sbjct: 172 LDTFRKEECYALSLVRYSFLASYHYMKKCTKPLVLWEEMIQLILESNDTQSCKL 225


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 138 LEDLLTRRVKAAENIMRKAEELDKDETPPPDNYVFDH-SVDLDKIKEK 184
           L++ L    +  EN+  K    +KD T  PDN   +  S++L++ KEK
Sbjct: 911 LKERLKFMEERQENLQSKLIAANKDTTQNPDNVEVEAISIELERTKEK 958


>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 289 NTDDVYDCRLRSWYVSAGGAPRDVLVLLDASGSMNGSSNQVIA-EEFXXXXXXXXXXXXQ 347
           +T  V+ C+ + +   + G P D LV L+A  +   +S +V+A  EF             
Sbjct: 80  STVGVHPCQAQCFLRHSEG-PEDYLVKLEALANKGKASGKVVAFGEFGLDYDRLHYAPAD 138

Query: 348 VNVLYFNEKVNSLIQ 362
           V  +YF E++   ++
Sbjct: 139 VQKMYFEEQLKVAVR 153


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 30  NRTVAEVKNSLEKHEDALSEVLKHKTGVNPIKITNVTQ 67
           N  + E KN L+  E+  S  +K  T  N +KI+ + +
Sbjct: 290 NSLIMEYKNELQSAEEHFSHKIKELTSENELKISRLQE 327


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,027,890
Number of Sequences: 5004
Number of extensions: 205518
Number of successful extensions: 544
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 14
length of query: 1174
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1093
effective length of database: 1,957,154
effective search space: 2139169322
effective search space used: 2139169322
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)