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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001493-TA|BGIBMGA001493-PA|IPR002035|von Willebrand
factor, type A, IPR013608|VWA N-terminal, IPR004010|Cache
         (1174 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298...    33   1.8  
06_01_0144 + 1089090-1091390                                           32   3.1  
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238     31   4.1  
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533...    31   4.1  
11_01_0272 - 2042490-2042781,2043146-2043203,2043385-2043401,204...    30   9.5  
05_01_0133 + 895107-895280,895960-896271,896815-897081,897161-89...    30   9.5  
02_02_0274 + 8464207-8464534,8464646-8464908,8465024-8465506,846...    30   9.5  
02_02_0273 - 8457871-8458296,8458391-8458873,8458989-8459251,845...    30   9.5  

>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
            31029955-31030017,31031597-31031704,31031772-31031836,
            31031928-31032015,31032104-31032157,31032234-31032380,
            31033358-31033429,31034077-31034226,31034317-31034430,
            31034762-31034875,31035925-31036077,31037437-31037529,
            31038202-31038318,31038984-31039086,31039192-31039376,
            31039448-31039522,31040451-31040534,31041547-31041588,
            31041668-31041847,31042109-31042162,31042239-31042280,
            31042869-31042967,31043040-31043174,31043325-31043427,
            31045061-31045134,31045227-31045270,31045393-31045471,
            31045592-31045705,31045842-31045946,31046027-31046161,
            31046447-31046546,31046870-31046883,31046936-31047004,
            31047079-31047182,31047299-31047347,31047931-31048023,
            31048102-31048210,31048619-31048755,31048851-31048928,
            31049015-31049104,31049402-31049467,31049546-31049638,
            31049711-31049839,31050024-31050122,31051366-31051512,
            31051605-31051910
          Length = 2050

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 12/29 (41%), Positives = 21/29 (72%)

Query: 30   NRTVAEVKNSLEKHEDALSEVLKHKTGVN 58
            N+   +V+ S+EKH  A+ EV++H TG++
Sbjct: 1536 NQERKQVEESIEKHRQAVKEVIEHYTGIS 1564


>06_01_0144 + 1089090-1091390
          Length = 766

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 803 NFAM-KKLNHIFSPIPPLLLEKTYQCDEGLMARLCKDAIAT 842
           +FA+ K L   F  +PP  +++T +C + ++  +CKDA AT
Sbjct: 288 SFALFKLLRRRFENLPPATMKETDECRDLILDGMCKDAQAT 328


>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
          Length = 697

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 2/98 (2%)

Query: 725 RRVLDHYTVVVALPNPDAHWAGSESQFTMKLAEAALKSLSRTDFAVQP--DWLYCRHVEP 782
           +R+LD   VVV         A    Q     A  A+      DF ++   D +   ++  
Sbjct: 386 KRLLDAAEVVVDRLLEHGSGAEMTRQAVRDAARGAIGDTGLLDFVIKSLGDTIVGNYIVR 445

Query: 783 HFDSREAEVLHFIRRRSDEPNFAMKKLNHIFSPIPPLL 820
                E  VLHF     +EP  A+  +    +P+PP++
Sbjct: 446 RVPDAETRVLHFSLEEYEEPTPALLDVEVECTPLPPVV 483


>01_05_0500 +
           22752190-22752329,22752957-22753032,22753292-22753351,
           22754718-22754882,22756299-22756358
          Length = 166

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 616 DHLKLILPYHQLGAGGSIILVDHRGNVVLHDNLKPTFDGDVLRPGYRTVDFLDLEQPAVS 675
           DHL L L   QL     ++ +++   ++ H  L+P  D     P Y  +  ++L +P   
Sbjct: 42  DHLDLSLTVQQLSGNLPVLRLEY---LLTHQGLQPMLDA----PVYGRIATIELFRPCTD 94

Query: 676 HLPRQYLPDWL 686
            L R Y   W+
Sbjct: 95  ELSRDYNITWM 105


>11_01_0272 -
           2042490-2042781,2043146-2043203,2043385-2043401,
           2043572-2043765,2043858-2043974,2044059-2044224,
           2044430-2044597,2044741-2046047
          Length = 772

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 158 ELDKDETPPPDNYVFDHSVDLDKIKEKKIPNQKGWFMPQNCTNLQKVPLNES 209
           +LDKD +  PDN     +  L+  + +K P + G  MP    N+ K P +ES
Sbjct: 652 QLDKDYSSSPDNETTQTA--LEDEERRKAPVKLGISMPSRVENVVKNPESES 701


>05_01_0133 + 895107-895280,895960-896271,896815-897081,897161-897265
          Length = 285

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 1006 SSAALMVPSILKSLWRSIALVLRVAQEFIGLLTIVNAAGTIRNHLNVKLQSSISLGSVGA 1065
            ++  + VP+ L S+W S+ L L   QE  G   +       ++  N  L+  + LGSV A
Sbjct: 188  AARGITVPTNLPSVWNSLQLQL---QEMHGASGVSVEGSFFQSIFNGLLKEGVVLGSVRA 244

Query: 1066 GV 1067
            GV
Sbjct: 245  GV 246


>02_02_0274 +
           8464207-8464534,8464646-8464908,8465024-8465506,
           8465601-8466026
          Length = 499

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 592 VFDATTAEYPVNRLLGVAGVDIPIDHLKLILPYHQLGAGGSIILVDHRGNVVLHDNL-KP 650
           +    + ++P+  L+ ++   + +    ++ P+  + A   + ++  R  V +  N  K 
Sbjct: 333 ITSVNSQKFPILNLIQMSATRVNLYQNAILSPFWNVNAHSLVYMIQGRSRVQVVSNFGKT 392

Query: 651 TFDGDVLRPG 660
            FDG VLRPG
Sbjct: 393 VFDG-VLRPG 401


>02_02_0273 -
           8457871-8458296,8458391-8458873,8458989-8459251,
           8459363-8459690
          Length = 499

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 592 VFDATTAEYPVNRLLGVAGVDIPIDHLKLILPYHQLGAGGSIILVDHRGNVVLHDNL-KP 650
           +    + ++P+  L+ ++   + +    ++ P+  + A   + ++  R  V +  N  K 
Sbjct: 333 ITSVNSQKFPILNLIQMSATRVNLYQNAILSPFWNVNAHSLVYMIQGRSRVQVVSNFGKT 392

Query: 651 TFDGDVLRPG 660
            FDG VLRPG
Sbjct: 393 VFDG-VLRPG 401


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,956,323
Number of Sequences: 37544
Number of extensions: 1287436
Number of successful extensions: 2806
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2804
Number of HSP's gapped (non-prelim): 8
length of query: 1174
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1084
effective length of database: 11,414,388
effective search space: 12373196592
effective search space used: 12373196592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)

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