Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001493-TA|BGIBMGA001493-PA|IPR002035|von Willebrand
factor, type A, IPR013608|VWA N-terminal, IPR004010|Cache
(1174 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 33 1.8
06_01_0144 + 1089090-1091390 32 3.1
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 31 4.1
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 31 4.1
11_01_0272 - 2042490-2042781,2043146-2043203,2043385-2043401,204... 30 9.5
05_01_0133 + 895107-895280,895960-896271,896815-897081,897161-89... 30 9.5
02_02_0274 + 8464207-8464534,8464646-8464908,8465024-8465506,846... 30 9.5
02_02_0273 - 8457871-8458296,8458391-8458873,8458989-8459251,845... 30 9.5
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 32.7 bits (71), Expect = 1.8
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 30 NRTVAEVKNSLEKHEDALSEVLKHKTGVN 58
N+ +V+ S+EKH A+ EV++H TG++
Sbjct: 1536 NQERKQVEESIEKHRQAVKEVIEHYTGIS 1564
>06_01_0144 + 1089090-1091390
Length = 766
Score = 31.9 bits (69), Expect = 3.1
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 803 NFAM-KKLNHIFSPIPPLLLEKTYQCDEGLMARLCKDAIAT 842
+FA+ K L F +PP +++T +C + ++ +CKDA AT
Sbjct: 288 SFALFKLLRRRFENLPPATMKETDECRDLILDGMCKDAQAT 328
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 31.5 bits (68), Expect = 4.1
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 725 RRVLDHYTVVVALPNPDAHWAGSESQFTMKLAEAALKSLSRTDFAVQP--DWLYCRHVEP 782
+R+LD VVV A Q A A+ DF ++ D + ++
Sbjct: 386 KRLLDAAEVVVDRLLEHGSGAEMTRQAVRDAARGAIGDTGLLDFVIKSLGDTIVGNYIVR 445
Query: 783 HFDSREAEVLHFIRRRSDEPNFAMKKLNHIFSPIPPLL 820
E VLHF +EP A+ + +P+PP++
Sbjct: 446 RVPDAETRVLHFSLEEYEEPTPALLDVEVECTPLPPVV 483
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 31.5 bits (68), Expect = 4.1
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 616 DHLKLILPYHQLGAGGSIILVDHRGNVVLHDNLKPTFDGDVLRPGYRTVDFLDLEQPAVS 675
DHL L L QL ++ +++ ++ H L+P D P Y + ++L +P
Sbjct: 42 DHLDLSLTVQQLSGNLPVLRLEY---LLTHQGLQPMLDA----PVYGRIATIELFRPCTD 94
Query: 676 HLPRQYLPDWL 686
L R Y W+
Sbjct: 95 ELSRDYNITWM 105
>11_01_0272 -
2042490-2042781,2043146-2043203,2043385-2043401,
2043572-2043765,2043858-2043974,2044059-2044224,
2044430-2044597,2044741-2046047
Length = 772
Score = 30.3 bits (65), Expect = 9.5
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 158 ELDKDETPPPDNYVFDHSVDLDKIKEKKIPNQKGWFMPQNCTNLQKVPLNES 209
+LDKD + PDN + L+ + +K P + G MP N+ K P +ES
Sbjct: 652 QLDKDYSSSPDNETTQTA--LEDEERRKAPVKLGISMPSRVENVVKNPESES 701
>05_01_0133 + 895107-895280,895960-896271,896815-897081,897161-897265
Length = 285
Score = 30.3 bits (65), Expect = 9.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 1006 SSAALMVPSILKSLWRSIALVLRVAQEFIGLLTIVNAAGTIRNHLNVKLQSSISLGSVGA 1065
++ + VP+ L S+W S+ L L QE G + ++ N L+ + LGSV A
Sbjct: 188 AARGITVPTNLPSVWNSLQLQL---QEMHGASGVSVEGSFFQSIFNGLLKEGVVLGSVRA 244
Query: 1066 GV 1067
GV
Sbjct: 245 GV 246
>02_02_0274 +
8464207-8464534,8464646-8464908,8465024-8465506,
8465601-8466026
Length = 499
Score = 30.3 bits (65), Expect = 9.5
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 592 VFDATTAEYPVNRLLGVAGVDIPIDHLKLILPYHQLGAGGSIILVDHRGNVVLHDNL-KP 650
+ + ++P+ L+ ++ + + ++ P+ + A + ++ R V + N K
Sbjct: 333 ITSVNSQKFPILNLIQMSATRVNLYQNAILSPFWNVNAHSLVYMIQGRSRVQVVSNFGKT 392
Query: 651 TFDGDVLRPG 660
FDG VLRPG
Sbjct: 393 VFDG-VLRPG 401
>02_02_0273 -
8457871-8458296,8458391-8458873,8458989-8459251,
8459363-8459690
Length = 499
Score = 30.3 bits (65), Expect = 9.5
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 592 VFDATTAEYPVNRLLGVAGVDIPIDHLKLILPYHQLGAGGSIILVDHRGNVVLHDNL-KP 650
+ + ++P+ L+ ++ + + ++ P+ + A + ++ R V + N K
Sbjct: 333 ITSVNSQKFPILNLIQMSATRVNLYQNAILSPFWNVNAHSLVYMIQGRSRVQVVSNFGKT 392
Query: 651 TFDGDVLRPG 660
FDG VLRPG
Sbjct: 393 VFDG-VLRPG 401
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,956,323
Number of Sequences: 37544
Number of extensions: 1287436
Number of successful extensions: 2806
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2804
Number of HSP's gapped (non-prelim): 8
length of query: 1174
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1084
effective length of database: 11,414,388
effective search space: 12373196592
effective search space used: 12373196592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)
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