GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001493-TA|BGIBMGA001493-PA|IPR002035|von Willebrand
factor, type A, IPR013608|VWA N-terminal, IPR004010|Cache
         (1174 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   2.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   3.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   4.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   6.3  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 181 IKEKKIPNQKGWFMPQNCTNLQKVPLNESNHFDGKVSLQTSSVYVSLEVFECDPKVMK 238
           +KE  +  Q+   M +N  +   V  +++ H  G +SL   + YV   + +C   V K
Sbjct: 383 LKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVISLNKLTSYVISGIVKCTDFVDK 440


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)

Query: 179 DKIKEKKIPNQKGW 192
           DK  EKKIP   GW
Sbjct: 206 DKSNEKKIPKSSGW 219


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 851 HPHRARDCSTCELGSITTFFASENLTL 877
           HPH       C+ G  T   +SEN+T+
Sbjct: 112 HPHNLVGKEACKQGVCTVEVSSENMTV 138


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 851 HPHRARDCSTCELGSITTFFASENLTL 877
           HPH       C+ G  T   +SEN+T+
Sbjct: 112 HPHNLVGKEACKQGVCTVEVSSENMTV 138


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 873 ENLTLGSNIYREHVPVSQQWLTAARALTSPDKGIIGVTGFHFYPSHL 919
           E  TL  ++ R  +P+S  WL   RA+   ++  + VT    Y S L
Sbjct: 626 ERTTLTCSVTRGDLPLSISWLKDGRAMGPSER--VHVTNMDQYNSIL 670


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,678
Number of Sequences: 429
Number of extensions: 13862
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 5
length of query: 1174
length of database: 140,377
effective HSP length: 65
effective length of query: 1109
effective length of database: 112,492
effective search space: 124753628
effective search space used: 124753628
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)