GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001492-TA|BGIBMGA001492-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type,
IPR012294|Transcription factor TFIID, C-terminal/DNA glycosylase,
N-terminal
         (209 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   2.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   5.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   5.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   5.4  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   9.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.4  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 167 KDKGWKYVWTKDGRI-YIRRGD 187
           KD GW   W + G++ Y  +G+
Sbjct: 319 KDSGWTKKWDEHGKVPYAYKGN 340


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 13/44 (29%), Positives = 16/44 (36%)

Query: 126 RVRRYLSTTDLDVPGTVRTVYLNERLSAYNRQLFGTARQKGKDK 169
           R RR      LD+      V+   R   + RQ  G     G DK
Sbjct: 31  RPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLGKQGDDGDDK 74


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 107 ILSVRLARRSVRDALLKGARVRRYLSTTDLDVPGTVRTVYLNERLSAYNRQLFGTARQKG 166
           +L VR     VRD +L    ++   + +    PG  R+ +L +       +L G      
Sbjct: 662 MLPVRNVSVDVRDNIL----LKNLQNPSTGSKPGKPRSAFLTDL------KLMGGKWSCD 711

Query: 167 KDKGWKYVWTKDGRIYI 183
            D GW  VW +  R Y+
Sbjct: 712 CDLGWVEVWERKRRQYL 728


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 13/44 (29%), Positives = 16/44 (36%)

Query: 126 RVRRYLSTTDLDVPGTVRTVYLNERLSAYNRQLFGTARQKGKDK 169
           R RR      LD+      V+   R   + RQ  G     G DK
Sbjct: 162 RPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLGKQGDDGDDK 205


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 167 KDKGWKYVW 175
           K+ GWK VW
Sbjct: 307 KEGGWKVVW 315


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 169  KGWKYVWTKDGRI 181
            KGWK V  + GRI
Sbjct: 2114 KGWKVVRDRRGRI 2126


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.139    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,085
Number of Sequences: 317
Number of extensions: 1641
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 209
length of database: 114,650
effective HSP length: 54
effective length of query: 155
effective length of database: 97,532
effective search space: 15117460
effective search space used: 15117460
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 41 (20.6 bits)