BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001492-TA|BGIBMGA001492-PA|IPR001965|Zinc finger, PHD-type, IPR011011|Zinc finger, FYVE/PHD-type, IPR012294|Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (209 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 34 0.013 SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 33 0.023 SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.093 SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 30 0.22 SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 30 0.29 SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 28 1.2 SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 27 1.5 SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 27 1.5 SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 27 2.0 SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 27 2.7 SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 4.6 SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 4.6 SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.1 SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 25 6.1 SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 25 8.1 >SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1131 Score = 34.3 bits (75), Expect = 0.013 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 2 AKCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPR--GWICPSC 48 + C C K+ + +C+ C +H CV P P GW C +C Sbjct: 260 SNCKVCKKWCAFDFSVQCADCKKYYHMDCVVPPLLKKPPHGFGWTCATC 308 >SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1513 Score = 33.5 bits (73), Expect = 0.023 Identities = 12/46 (26%), Positives = 18/46 (39%) Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48 +C CG + C C +H C+ P T + W C +C Sbjct: 270 QCEYCGLDKNPETILLCDGCEAAYHTSCLDPPLTSIPKEDWYCDAC 315 >SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 251 Score = 31.5 bits (68), Expect = 0.093 Identities = 15/43 (34%), Positives = 30/43 (69%), Gaps = 1/43 (2%) Query: 129 RYLSTTDLDV-PGTVRTVYLNERLSAYNRQLFGTARQKGKDKG 170 R L+T+ L + P T ++ LN++LS+ +++ F T+R+ G++ G Sbjct: 169 RGLATSPLQINPTTSKSPLLNKKLSSTSQEPFRTSRRSGQESG 211 >SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1588 Score = 30.3 bits (65), Expect = 0.22 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 3/48 (6%) Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAP-RGWICPSCL 49 KC C + + C C N+H CV P + W C SC+ Sbjct: 298 KCKLCAQ--EGSSLVTCCICQSNYHYACVEAPFAPFSDIHYWTCNSCI 343 Score = 28.3 bits (60), Expect = 0.87 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 18 RCSKCSDNFHKGCVAIPSTGVAP-RGWICPSCLAK 51 +C C + FH CV + S V+ + CP C +K Sbjct: 1471 QCHNCLEWFHYECVGLSSDIVSTLSNYACPDCCSK 1505 >SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharomyces pombe|chr 2|||Manual Length = 1016 Score = 29.9 bits (64), Expect = 0.29 Identities = 11/28 (39%), Positives = 14/28 (50%) Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGC 30 +C CG+FL A +C C HK C Sbjct: 418 RCALCGEFLKNAAGMQCIDCHYTCHKKC 445 >SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1418 Score = 27.9 bits (59), Expect = 1.2 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 6/36 (16%) Query: 19 CSKCSDNFHKGCVAIPSTGVAPR------GWICPSC 48 C CS+ +H C +PS R G+ICP C Sbjct: 233 CDHCSNVYHYDCSPLPSLNKETRNYSQQNGFICPLC 268 >SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pombe|chr 3|||Manual Length = 424 Score = 27.5 bits (58), Expect = 1.5 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%) Query: 19 CSKCSDNFHKGCVAIP-STGVAPRGWICPSC 48 C C D FH CV IP S + CP C Sbjct: 135 CDGCEDWFHGTCVNIPESYNDLTVQYFCPKC 165 >SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosaccharomyces pombe|chr 1|||Manual Length = 988 Score = 27.5 bits (58), Expect = 1.5 Identities = 10/29 (34%), Positives = 14/29 (48%) Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCV 31 +C C + S + +C CS HK CV Sbjct: 426 RCAVCAELFSYSPGLQCENCSFVCHKKCV 454 >SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 372 Score = 27.1 bits (57), Expect = 2.0 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%) Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVP 53 +C C + + D C FH+ C+A + CP+C +VP Sbjct: 320 ECVICLESFTKGDKVVALPCKHEFHRPCIA---KWIVDYRHACPTCNTEVP 367 >SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr 1|||Manual Length = 473 Score = 26.6 bits (56), Expect = 2.7 Identities = 11/34 (32%), Positives = 16/34 (47%) Query: 28 KGCVAIPSTGVAPRGWICPSCLAKVPRGDNAATP 61 +G V P+ G+ RG+ P C +P N P Sbjct: 90 EGSVLDPNEGIRFRGYTIPECQKLLPSSPNGKQP 123 >SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pombe|chr 1||Partial|Manual Length = 1887 Score = 25.8 bits (54), Expect = 4.6 Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 5 GACGKFLSTADCARCSKCSDN 25 G C S A+C CS+CSD+ Sbjct: 1561 GECVCCASFANCVYCSRCSDS 1581 >SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1919 Score = 25.8 bits (54), Expect = 4.6 Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 5 GACGKFLSTADCARCSKCSDN 25 G C S A+C CS+CSD+ Sbjct: 1561 GECVCCASFANCVYCSRCSDS 1581 >SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1060 Score = 25.4 bits (53), Expect = 6.1 Identities = 15/49 (30%), Positives = 21/49 (42%) Query: 101 DENRPRILSVRLARRSVRDALLKGARVRRYLSTTDLDVPGTVRTVYLNE 149 D NR I S + + + LLK + + ST L VP + NE Sbjct: 61 DSNRSNISSSLRSEMEMSNNLLKNTQNDTWTSTVGLSVPENQEAMNFNE 109 >SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 25.4 bits (53), Expect = 6.1 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 125 ARVRRYLSTTDLDVPGTVRTVYLNERLSAYNRQLFGTARQ 164 A+++ + S L + G +T+YLN+ A L TA Q Sbjct: 5 AKIKAFRSYVPL-LQGNTKTIYLNQSFQAPMNMLVSTALQ 43 >SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 260 Score = 25.0 bits (52), Expect = 8.1 Identities = 12/40 (30%), Positives = 18/40 (45%) Query: 134 TDLDVPGTVRTVYLNERLSAYNRQLFGTARQKGKDKGWKY 173 +D G V T L+ + + L +QK K+K KY Sbjct: 78 SDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKY 117 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.324 0.139 0.447 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 852,732 Number of Sequences: 5004 Number of extensions: 30270 Number of successful extensions: 91 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 20 length of query: 209 length of database: 2,362,478 effective HSP length: 70 effective length of query: 139 effective length of database: 2,012,198 effective search space: 279695522 effective search space used: 279695522 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.5 bits) S2: 52 (25.0 bits)
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