Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001492-TA|BGIBMGA001492-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type,
IPR012294|Transcription factor TFIID, C-terminal/DNA glycosylase,
N-terminal
(209 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 34 0.013
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 33 0.023
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.093
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 30 0.22
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 30 0.29
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 28 1.2
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 27 1.5
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 27 1.5
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 27 2.0
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 27 2.7
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 4.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 4.6
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.1
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 25 6.1
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 25 8.1
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 34.3 bits (75), Expect = 0.013
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 2 AKCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPR--GWICPSC 48
+ C C K+ + +C+ C +H CV P P GW C +C
Sbjct: 260 SNCKVCKKWCAFDFSVQCADCKKYYHMDCVVPPLLKKPPHGFGWTCATC 308
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 33.5 bits (73), Expect = 0.023
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
+C CG + C C +H C+ P T + W C +C
Sbjct: 270 QCEYCGLDKNPETILLCDGCEAAYHTSCLDPPLTSIPKEDWYCDAC 315
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 31.5 bits (68), Expect = 0.093
Identities = 15/43 (34%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 129 RYLSTTDLDV-PGTVRTVYLNERLSAYNRQLFGTARQKGKDKG 170
R L+T+ L + P T ++ LN++LS+ +++ F T+R+ G++ G
Sbjct: 169 RGLATSPLQINPTTSKSPLLNKKLSSTSQEPFRTSRRSGQESG 211
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 30.3 bits (65), Expect = 0.22
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAP-RGWICPSCL 49
KC C + + C C N+H CV P + W C SC+
Sbjct: 298 KCKLCAQ--EGSSLVTCCICQSNYHYACVEAPFAPFSDIHYWTCNSCI 343
Score = 28.3 bits (60), Expect = 0.87
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 18 RCSKCSDNFHKGCVAIPSTGVAP-RGWICPSCLAK 51
+C C + FH CV + S V+ + CP C +K
Sbjct: 1471 QCHNCLEWFHYECVGLSSDIVSTLSNYACPDCCSK 1505
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 29.9 bits (64), Expect = 0.29
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGC 30
+C CG+FL A +C C HK C
Sbjct: 418 RCALCGEFLKNAAGMQCIDCHYTCHKKC 445
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 19 CSKCSDNFHKGCVAIPSTGVAPR------GWICPSC 48
C CS+ +H C +PS R G+ICP C
Sbjct: 233 CDHCSNVYHYDCSPLPSLNKETRNYSQQNGFICPLC 268
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 19 CSKCSDNFHKGCVAIP-STGVAPRGWICPSC 48
C C D FH CV IP S + CP C
Sbjct: 135 CDGCEDWFHGTCVNIPESYNDLTVQYFCPKC 165
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCV 31
+C C + S + +C CS HK CV
Sbjct: 426 RCAVCAELFSYSPGLQCENCSFVCHKKCV 454
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVP 53
+C C + + D C FH+ C+A + CP+C +VP
Sbjct: 320 ECVICLESFTKGDKVVALPCKHEFHRPCIA---KWIVDYRHACPTCNTEVP 367
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 28 KGCVAIPSTGVAPRGWICPSCLAKVPRGDNAATP 61
+G V P+ G+ RG+ P C +P N P
Sbjct: 90 EGSVLDPNEGIRFRGYTIPECQKLLPSSPNGKQP 123
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 5 GACGKFLSTADCARCSKCSDN 25
G C S A+C CS+CSD+
Sbjct: 1561 GECVCCASFANCVYCSRCSDS 1581
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 5 GACGKFLSTADCARCSKCSDN 25
G C S A+C CS+CSD+
Sbjct: 1561 GECVCCASFANCVYCSRCSDS 1581
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.4 bits (53), Expect = 6.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 101 DENRPRILSVRLARRSVRDALLKGARVRRYLSTTDLDVPGTVRTVYLNE 149
D NR I S + + + LLK + + ST L VP + NE
Sbjct: 61 DSNRSNISSSLRSEMEMSNNLLKNTQNDTWTSTVGLSVPENQEAMNFNE 109
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 125 ARVRRYLSTTDLDVPGTVRTVYLNERLSAYNRQLFGTARQ 164
A+++ + S L + G +T+YLN+ A L TA Q
Sbjct: 5 AKIKAFRSYVPL-LQGNTKTIYLNQSFQAPMNMLVSTALQ 43
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 134 TDLDVPGTVRTVYLNERLSAYNRQLFGTARQKGKDKGWKY 173
+D G V T L+ + + L +QK K+K KY
Sbjct: 78 SDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKY 117
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.324 0.139 0.447
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 852,732
Number of Sequences: 5004
Number of extensions: 30270
Number of successful extensions: 91
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 20
length of query: 209
length of database: 2,362,478
effective HSP length: 70
effective length of query: 139
effective length of database: 2,012,198
effective search space: 279695522
effective search space used: 279695522
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)
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