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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001492-TA|BGIBMGA001492-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type,
IPR012294|Transcription factor TFIID, C-terminal/DNA glycosylase,
N-terminal
         (209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    34   0.013
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    33   0.023
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.093
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    30   0.22 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    30   0.29 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    28   1.2  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    27   1.5  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   1.5  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    27   2.0  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   4.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   4.6  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   6.1  
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   6.1  
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    25   8.1  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 2   AKCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPR--GWICPSC 48
           + C  C K+ +     +C+ C   +H  CV  P     P   GW C +C
Sbjct: 260 SNCKVCKKWCAFDFSVQCADCKKYYHMDCVVPPLLKKPPHGFGWTCATC 308


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 33.5 bits (73), Expect = 0.023
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 3   KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
           +C  CG   +      C  C   +H  C+  P T +    W C +C
Sbjct: 270 QCEYCGLDKNPETILLCDGCEAAYHTSCLDPPLTSIPKEDWYCDAC 315


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 31.5 bits (68), Expect = 0.093
 Identities = 15/43 (34%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 129 RYLSTTDLDV-PGTVRTVYLNERLSAYNRQLFGTARQKGKDKG 170
           R L+T+ L + P T ++  LN++LS+ +++ F T+R+ G++ G
Sbjct: 169 RGLATSPLQINPTTSKSPLLNKKLSSTSQEPFRTSRRSGQESG 211


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 3   KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAP-RGWICPSCL 49
           KC  C +    +    C  C  N+H  CV  P    +    W C SC+
Sbjct: 298 KCKLCAQ--EGSSLVTCCICQSNYHYACVEAPFAPFSDIHYWTCNSCI 343



 Score = 28.3 bits (60), Expect = 0.87
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 18   RCSKCSDNFHKGCVAIPSTGVAP-RGWICPSCLAK 51
            +C  C + FH  CV + S  V+    + CP C +K
Sbjct: 1471 QCHNCLEWFHYECVGLSSDIVSTLSNYACPDCCSK 1505


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 3   KCGACGKFLSTADCARCSKCSDNFHKGC 30
           +C  CG+FL  A   +C  C    HK C
Sbjct: 418 RCALCGEFLKNAAGMQCIDCHYTCHKKC 445


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 6/36 (16%)

Query: 19  CSKCSDNFHKGCVAIPSTGVAPR------GWICPSC 48
           C  CS+ +H  C  +PS     R      G+ICP C
Sbjct: 233 CDHCSNVYHYDCSPLPSLNKETRNYSQQNGFICPLC 268


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 19  CSKCSDNFHKGCVAIP-STGVAPRGWICPSC 48
           C  C D FH  CV IP S       + CP C
Sbjct: 135 CDGCEDWFHGTCVNIPESYNDLTVQYFCPKC 165


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 3   KCGACGKFLSTADCARCSKCSDNFHKGCV 31
           +C  C +  S +   +C  CS   HK CV
Sbjct: 426 RCAVCAELFSYSPGLQCENCSFVCHKKCV 454


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 3   KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVP 53
           +C  C +  +  D      C   FH+ C+A     +      CP+C  +VP
Sbjct: 320 ECVICLESFTKGDKVVALPCKHEFHRPCIA---KWIVDYRHACPTCNTEVP 367


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 28  KGCVAIPSTGVAPRGWICPSCLAKVPRGDNAATP 61
           +G V  P+ G+  RG+  P C   +P   N   P
Sbjct: 90  EGSVLDPNEGIRFRGYTIPECQKLLPSSPNGKQP 123


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 5    GACGKFLSTADCARCSKCSDN 25
            G C    S A+C  CS+CSD+
Sbjct: 1561 GECVCCASFANCVYCSRCSDS 1581


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 5    GACGKFLSTADCARCSKCSDN 25
            G C    S A+C  CS+CSD+
Sbjct: 1561 GECVCCASFANCVYCSRCSDS 1581


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 101 DENRPRILSVRLARRSVRDALLKGARVRRYLSTTDLDVPGTVRTVYLNE 149
           D NR  I S   +   + + LLK  +   + ST  L VP     +  NE
Sbjct: 61  DSNRSNISSSLRSEMEMSNNLLKNTQNDTWTSTVGLSVPENQEAMNFNE 109


>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 125 ARVRRYLSTTDLDVPGTVRTVYLNERLSAYNRQLFGTARQ 164
           A+++ + S   L + G  +T+YLN+   A    L  TA Q
Sbjct: 5   AKIKAFRSYVPL-LQGNTKTIYLNQSFQAPMNMLVSTALQ 43


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 134 TDLDVPGTVRTVYLNERLSAYNRQLFGTARQKGKDKGWKY 173
           +D    G V T  L+    +  + L    +QK K+K  KY
Sbjct: 78  SDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKY 117


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.139    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 852,732
Number of Sequences: 5004
Number of extensions: 30270
Number of successful extensions: 91
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 20
length of query: 209
length of database: 2,362,478
effective HSP length: 70
effective length of query: 139
effective length of database: 2,012,198
effective search space: 279695522
effective search space used: 279695522
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)

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