Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001492-TA|BGIBMGA001492-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type,
IPR012294|Transcription factor TFIID, C-terminal/DNA glycosylase,
N-terminal
(209 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 39 0.003
02_01_0173 + 1190846-1191134,1191235-1191557,1191645-1191958,119... 39 0.003
09_02_0034 + 3151850-3152341 38 0.006
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498... 38 0.008
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665... 37 0.010
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 37 0.010
05_01_0459 - 3637741-3637995,3638078-3638204,3641273-3641495,364... 37 0.014
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 36 0.024
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701... 35 0.042
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 35 0.055
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 34 0.073
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 34 0.096
07_03_1229 + 25023537-25024094 34 0.096
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 33 0.17
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 33 0.22
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 33 0.22
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076... 32 0.39
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 31 0.51
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13... 31 0.51
04_01_0006 - 112476-114182,114627-114676,115289-115463 31 0.68
01_06_1574 + 38337669-38338196 31 0.68
04_04_0316 - 24338774-24339367 31 0.90
09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919... 30 1.2
06_01_1111 - 9148237-9148758 30 1.2
06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673... 30 1.2
02_05_1086 + 33994295-33994402,33994485-33994674,33994734-339947... 30 1.2
01_07_0292 + 42560302-42560668,42560818-42560910,42563746-425639... 30 1.2
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 29 2.1
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 29 2.7
06_02_0086 - 11567390-11567634,11568316-11568341,11571082-115712... 29 2.7
01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557 29 2.7
07_03_1730 - 29099262-29099807 29 3.6
07_03_1242 + 25113464-25114150 29 3.6
02_05_0605 + 30300977-30301912 29 3.6
02_05_0546 + 29889861-29890182,29891057-29892798 29 3.6
01_01_0449 + 3335408-3335479,3336310-3336389,3336911-3336989,333... 29 3.6
09_02_0035 + 3182151-3182618 28 4.8
09_01_0127 + 1928816-1929137,1929221-1929747 28 4.8
07_03_1230 + 25044126-25044683 28 4.8
05_04_0172 + 18718661-18718930,18719410-18720252,18720326-187203... 28 4.8
03_06_0322 + 33114988-33115130,33116972-33117024,33117432-331177... 28 4.8
08_02_1381 - 26551920-26552053,26552963-26553070,26553154-265533... 28 6.3
10_08_0303 - 16638379-16640199 27 8.4
07_01_0623 + 4638952-4639024,4640422-4640439,4641312-4641660,464... 27 8.4
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/48 (31%), Positives = 18/48 (37%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAK 51
C CG C KC +H C+ P + W CPSC K
Sbjct: 1081 CKVCGIDRDDDSVLLCDKCDSEYHTYCLNPPLARIPEGNWYCPSCQTK 1128
>02_01_0173 +
1190846-1191134,1191235-1191557,1191645-1191958,
1192302-1192461
Length = 361
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSCLAKVP 53
+C ACG S A+ C C H C+ P P G W CPSC + P
Sbjct: 34 RCEACGSGESAAELLLCDGCDRGLHIFCLR-PILPRVPAGDWFCPSCASPSP 84
>09_02_0034 + 3151850-3152341
Length = 163
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVPRGDNAA 59
C C + ++ AD C+ +H GC++ P G+ CP C A++P D+AA
Sbjct: 70 CSVCTEEIAVADAVVRLPCAHWYHAGCIS-PWLGIRS---TCPMCRAELPASDDAA 121
>01_05_0282 -
20347915-20348874,20348968-20349012,20349568-20349816,
20350393-20350581,20351051-20351155,20351165-20351488,
20351493-20351555
Length = 644
Score = 37.5 bits (83), Expect = 0.008
Identities = 13/45 (28%), Positives = 17/45 (37%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C CGK C +C FH C+ P + W C +C
Sbjct: 371 CNECGKVAKIDSILTCKRCMLAFHVSCIEPPVPSTSTGSWCCKTC 415
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 19 CSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C C + +H C+ T + W C SC
Sbjct: 562 CDGCDEAYHLYCITPRRTSIPKGKWYCSSC 591
>07_03_1780 -
29465873-29466130,29466236-29466335,29466473-29466559,
29466682-29467000,29467097-29468567
Length = 744
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSCLAKV 52
C CG+ L C +C FH CV + ST P+G W CP+C +
Sbjct: 417 CHDCGELLM------CDRCPSMFHHACVGLEST---PQGDWFCPACTCAI 457
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C C CS CS + H GC+ P TGV W C +C
Sbjct: 642 CQICNTEEEKTLLLHCSGCSRHVHPGCLTPPWTGVLTDDWSCYTC 686
>05_01_0459 -
3637741-3637995,3638078-3638204,3641273-3641495,
3641592-3641624,3641716-3641854
Length = 258
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 4 CGACGKFLSTADC-ARCSKCSDNFHKGCVAI-PSTGVAPRGWICPSCLAKVPR 54
CG CG S + C C +H CV I P+ + + + CPSC +K PR
Sbjct: 205 CGTCGGIYSADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSCSSKRPR 257
>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAK 51
CG C K + +D C C FHK +P G ++C CL++
Sbjct: 1137 CGHCDKEVKISDAVNCQYCEALFHKKHFKVP-RGATDAYYVCNKCLSE 1183
Score = 31.9 bits (69), Expect = 0.39
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 19 CSKCSDNFHKGCVAIPSTGVAPRGWICPSCL 49
C C FH CV + + W CP CL
Sbjct: 458 CDGCPAAFHSKCVGVVEDLLPEGNWFCPECL 488
>06_03_1511 -
30669292-30669401,30669894-30669930,30670012-30670107,
30670186-30670281,30670679-30670828,30670956-30671100,
30671178-30671251,30671325-30671445,30671697-30671821,
30671898-30672047,30672249-30672324,30672496-30672557,
30672597-30672839,30673354-30673683,30673776-30673932,
30674008-30674139,30674219-30674277,30674734-30674798,
30674878-30675094,30675413-30675499,30675655-30675750,
30675938-30676003,30676096-30676287,30676380-30676532,
30676812-30677052,30677322-30677515,30678212-30678348,
30678474-30678480,30678708-30678830,30679370-30679427,
30680018-30680090,30680493-30681765
Length = 1714
Score = 35.1 bits (77), Expect = 0.042
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCL 49
C C L C +C +H C++ P V P W C C+
Sbjct: 259 CEQCNSGLHGEVMLLCDRCDKGWHLYCLSPPLESVPPGNWYCSECM 304
Score = 34.3 bits (75), Expect = 0.073
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCV-AIPSTGVAPRGWICPSC 48
C C + RC C +H CV +P++ R W CP C
Sbjct: 1418 CAICSCDVGDHITPRCMICQARYHSSCVEPLPASTQVTREWTCPFC 1463
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 34.7 bits (76), Expect = 0.055
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCV--AIPS-TGVAPRGWICPSCLAK 51
C +C K +S D +CS C N HK C ++ S G A C CL K
Sbjct: 1323 CTSCKKDVSFRDIIKCSSCQGNCHKECTLRSVGSKEGNAASSLTCKLCLQK 1373
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSCL 49
C CG T C C C +H C+ + P+G W CP C+
Sbjct: 547 CRICGMD-GTLVC--CDGCPWAYHSRCIG-QNKAFLPQGDWFCPECV 589
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 34.3 bits (75), Expect = 0.073
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAI--PSTGVAPRGWICPSCLAKV 52
C C + + RCS C+ +H C++ P T VA W+CP C V
Sbjct: 18 CMLCKVLTTEVEQLRCSTCATPWHTPCLSSIPPLTDVA--HWVCPDCSGDV 66
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 33.9 bits (74), Expect = 0.096
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 4 CGACGKFLSTADCARCSKCSDNF-HKGCVAIPSTGVAPRGWICPSCLAKV 52
C CG + A CS+C+D H C+ + V W+C +C ++V
Sbjct: 279 CDICGDIGAEEKLAVCSRCNDGAEHIYCMRVMMQEVPKAKWLCETCHSEV 328
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 4 CGACGKFLSTADCARCSKCSDNF-HKGCVAIPSTGVAPRGWICPSC 48
C CG A CS+C+D H C+ + V W C C
Sbjct: 84 CDICGDVGEEKKLAICSRCNDGAEHIYCMRVMMPEVPEGDWFCEEC 129
>07_03_1229 + 25023537-25024094
Length = 185
Score = 33.9 bits (74), Expect = 0.096
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
C AC + + T D RC KC N H C+A+P
Sbjct: 29 CTACERRI-TGDGYRCRKCDFNIHHACLALP 58
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAK 51
+C C + A C C FH CV P V W CP C A+
Sbjct: 162 ECRVCFR-AGAAVMVECDVCLGGFHLRCVRPPLRRVPEGDWACPYCEAE 209
>08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-269805,
269895-270098,271532-271664,271810-271881,273106-273168,
273252-275034,275169-275217
Length = 1229
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 1 MAKCGACGKFLSTADCARCSKCSDNFHKGCVAI--PSTGVAPRGWICPSCLAK 51
+ C CG + + C +C +H CV + P P W C +C K
Sbjct: 962 LCPCDGCGTKVDVEEGLICDECDTMYHFACVKLLNPDIKQVPAIWHCSTCSFK 1014
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSC 48
C C + C C + +H C+ P+ P+G W C C
Sbjct: 1143 CRGCFQDKDDDQIVMCDGCDEGYHIYCMR-PARNTIPKGKWYCTFC 1187
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSCLAK 51
CG CG D C C FH C+ I P G W C SC+ +
Sbjct: 735 CGICG---DGGDLLCCDNCPSTFHLACLGIK----MPSGDWHCSSCICR 776
>12_02_0966 -
24906361-24906958,24907084-24907250,24907403-24907650,
24907824-24908001,24908196-24908372,24908459-24908563,
24908633-24908770,24909757-24910836
Length = 896
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAK 51
+CG G F + D C C + GC+ + + G P G C C+ +
Sbjct: 226 RCGKGGSFWARGDKEACLACGARYCGGCL-LRAMGSMPEGRKCLDCIGR 273
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 31.5 bits (68), Expect = 0.51
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 19 CSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAK 51
C C +H C+ P P W CP C K
Sbjct: 47 CDSCPRTYHLECLNPPLKRAPPGNWQCPRCRTK 79
>06_01_0007 +
130582-131544,132187-132264,132615-132732,133228-133271,
133389-133448,133536-133588,133671-133837,133963-134167,
134989-135046,135225-135281,135363-135608,135938-136002,
136090-136158,136238-136331,136467-136607,137159-137304,
137452-138110,138222-138335,138406-138560
Length = 1163
Score = 31.5 bits (68), Expect = 0.51
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C CG+ D C C +FH CV + +GV P W C +C
Sbjct: 473 CRECGQ---GGDIFPCKMCPRSFHPACVGL--SGV-PSEWYCDNC 511
>04_01_0006 - 112476-114182,114627-114676,115289-115463
Length = 643
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 2 AKCGACGKFLSTADCAR-CSKCSDNFHKGCVAIPSTGVAPRGWI-CPSCLA 50
++CG C + T A ++CS +FH C+A + +A + CP C A
Sbjct: 76 SRCGVCSHGVKTGAAAVFTAECSHSFHFPCIAAHAHALAAATALSCPVCAA 126
>01_06_1574 + 38337669-38338196
Length = 175
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/48 (27%), Positives = 18/48 (37%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAK 51
C C C C + +H C+ P T V W C SC+ +
Sbjct: 74 CRVCKVDRDDEQIILCDGCDEGYHLYCLIPPLTLVPEGEWHCSSCIVQ 121
>04_04_0316 - 24338774-24339367
Length = 197
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/51 (27%), Positives = 17/51 (33%)
Query: 1 MAKCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAK 51
+ C C + D R C FHK C + G CP C K
Sbjct: 44 LGDCSMCRYGMVAGDVVRTLSCGHVFHKDCDYSVDKWLREHGLSCPECRKK 94
>09_04_0588 -
18789971-18790000,18790334-18790507,18791470-18791954,
18792912-18793266
Length = 347
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVPRGDNAATP 61
KC CGK + RC+ CS H C A+ P P LA P ATP
Sbjct: 125 KCDICGKSVKGFSF-RCTSCSFAMHPCCAAMSRRMDLPVAHEHPLMLAPSPPTPPMATP 182
>06_01_1111 - 9148237-9148758
Length = 173
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 4 CGACGKFLSTAD-CARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKV 52
C C + L D C R +C +FH CV + + W CP C A V
Sbjct: 90 CAVCLEELEAGDRCRRLPRCEHSFHAPCV---DSWLRKSRW-CPVCRADV 135
>06_01_0878 +
6735266-6735340,6735946-6736041,6738610-6738720,
6738816-6739309,6739422-6739587,6739666-6739789,
6739874-6739986,6740085-6740693,6743095-6743385,
6743845-6743913,6744099-6744188,6744281-6744696,
6744882-6744969
Length = 913
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 4 CGACGKFLSTA--DCARCSK-CSDNFHKGCVAIPSTGV----APRGWICPSCLAKV 52
C ACG T D C C FH+ C+ P GW+CP+C K+
Sbjct: 317 CAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDCKI 372
>02_05_1086 +
33994295-33994402,33994485-33994674,33994734-33994789,
33995413-33995550,33995655-33995848,33996125-33996467
Length = 342
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKV 52
+C C + L + C+ FH GC A+P A R CP C A V
Sbjct: 283 ECAVCLEELRAGEAVAHLPCTHRFHWGC-AVPWVQTASR---CPVCRAAV 328
>01_07_0292 +
42560302-42560668,42560818-42560910,42563746-42563969,
42564047-42564147,42564229-42564441,42564843-42565002
Length = 385
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSC 48
+C CG + C C H C+ P P G W CP C
Sbjct: 69 RCDVCGSGERDEELLLCDGCDRGRHTFCLR-PIAARVPTGPWFCPPC 114
>12_02_0133 -
14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 4 CGACGKFLSTADCARCSKCSDNF-HKGCVAIPSTGVAPRGWICPSC 48
C CG A C++C+D H C+ + V W+C C
Sbjct: 229 CDICGDVGEEERLAVCTRCNDGAEHIYCMRVMMEEVPEGEWLCEEC 274
>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 2 AKCGACG--KFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSC 48
A C CG + CSKC H+ C + PRG W C C
Sbjct: 1276 ASCCVCGISNLEPSNQLIECSKCFIKVHQACYGVLK---VPRGQWFCKPC 1322
>06_02_0086 -
11567390-11567634,11568316-11568341,11571082-11571224,
11571569-11571682,11571855-11572888,11574723-11575047,
11576843-11577124
Length = 722
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 4 CGACGKFL-STADCARCSKCSDNFHKGCVAIPSTGVAP--RGWICPSCLAK 51
C C F+ C C H C+ V P W CP+C+A+
Sbjct: 304 CQVCKVFIIDIHSMIICDACERGIHLKCLQHDGVNVLPPKAEWYCPTCVAR 354
>01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557
Length = 912
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 137 DVPGTVRTVYLNERLSAYNRQLFGTARQKGKDKGWKYVWTKDGRIYIRRGDGTP 190
DVP +V +R+ + QL AR++ +GW + W D + ++ DG P
Sbjct: 69 DVPSSVA----GDRVIVVSNQLPVVARRRPDGRGWSFSWDDDS-LLLQLRDGIP 117
>07_03_1730 - 29099262-29099807
Length = 181
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVPRGDNAA 59
+C C + D R +C FH+GC+ P CP C ++ + +AA
Sbjct: 96 QCAVCLSGIEEGDEVRELRCRHLFHRGCLDRWWLSARPPA-TCPLCRCRLLQSPSAA 151
>07_03_1242 + 25113464-25114150
Length = 228
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAP---RGW 43
+C AC + S RC C H GCV+ G AP RGW
Sbjct: 143 ECAACHRDCSIWHY-RCGLCLFMLHIGCVSPAGAGGAPAGARGW 185
>02_05_0605 + 30300977-30301912
Length = 311
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVPRGD 56
+C C + + AR C+ +H GC+ +P + CP C ++P D
Sbjct: 230 QCAVCKDGMEAGERARRLPCAHLYHDGCI-LPWLAIRN---TCPLCRHELPTDD 279
>02_05_0546 + 29889861-29890182,29891057-29892798
Length = 687
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 19 CSKCSDNFHKGCVA-IPSTGVAPRGWICPSCLAK 51
C C H C+ + GV W CP+CL K
Sbjct: 225 CDACEKGAHLKCLQHYGNKGVPKAEWHCPTCLTK 258
>01_01_0449 +
3335408-3335479,3336310-3336389,3336911-3336989,
3337342-3337423,3337820-3337976,3338660-3338717,
3338718-3338828,3339211-3339257,3339820-3339948,
3340750-3340834,3341264-3341344,3341881-3341886
Length = 328
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 99 EGDENRPRILSVRLARRSVRDALLKGARVRRYLSTTDLDVPGTVRTVYLNERLSAYNRQ- 157
E D R + + L++ ++RDA L ++ L + DL++P T ++ L R
Sbjct: 218 EDDTAIARGVLMYLSQGNLRDANLLMDELKDQLKSADLEIPKTDLIQFIKYLLPTLERDA 277
Query: 158 --LFGTARQKGK 167
LF T RQK K
Sbjct: 278 YPLFRTLRQKYK 289
>09_02_0035 + 3182151-3182618
Length = 155
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVPRGDNAA 59
C C + ++ C+ +H GC+ P + CP+C A++PR AA
Sbjct: 71 CAVCTEEVAARQAVVRLPCAHWYHAGCIG-PWLRIRTN---CPTCRAELPREPAAA 122
>09_01_0127 + 1928816-1929137,1929221-1929747
Length = 282
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 131 LSTTDLDVPGTVRTVYLNERLSAYNRQLFGTARQKGKDKGWKYVWTKDGR 180
L T+ + T T L SAY+ Q FGT R +K +K +WT + +
Sbjct: 163 LVNTEDKIEWTQTTDGLYSARSAYHAQFFGTER----NKSFKMIWTAEAQ 208
>07_03_1230 + 25044126-25044683
Length = 185
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 4 CGACGKFLSTADCARCS--KCSDNFHKGCVAIPST 36
C AC + + T D RC +C + H+ C+A+P++
Sbjct: 31 CAACERVV-TGDGYRCEHGECDFHVHRSCLALPAS 64
>05_04_0172 +
18718661-18718930,18719410-18720252,18720326-18720354,
18720439-18720529,18720625-18720779,18721552-18721662,
18722579-18722645
Length = 521
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 2 AKCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVPRGD 56
A+C C + DC R C+ FH CV + +CP C V R +
Sbjct: 462 AQCYICLVEYAEGDCVRILPCNHEFHLTCV---DKWLKEIHRVCPLCRGDVCRSN 513
>03_06_0322 +
33114988-33115130,33116972-33117024,33117432-33117780,
33118450-33118518,33119015-33119150,33120048-33120080
Length = 260
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 18 RCSKCSDNFHKGCVAIP-STGVAPRGWICPSCLAK 51
+C CSD FH CV I + C SC+A+
Sbjct: 198 QCEDCSDWFHPSCVEITIKEAKKLEHFYCKSCIAE 232
>08_02_1381 -
26551920-26552053,26552963-26553070,26553154-26553340,
26554107-26554316
Length = 212
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 13/69 (18%)
Query: 95 RHFTEGDENRPRILSVRLARRSVRDALLKGARVRRYLSTTDLDVPGTVRTVYLNERLSAY 154
+H+ E +R IL+ ++RR+V ALL+ A + + +V VYL RL +
Sbjct: 156 QHWLEAQTDRQAILNENMSRRAVHKALLESAAL----------IAASVIQVYLLRRL--F 203
Query: 155 NRQLFGTAR 163
R+L GT+R
Sbjct: 204 ERKL-GTSR 211
>10_08_0303 - 16638379-16640199
Length = 606
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAK 51
C C ++ ++CS FH C+A VA +CP C A+
Sbjct: 8 CAICLGEIAGGQAIFTAECSHTFHNRCIA---RNVAHGRRVCPLCNAR 52
>07_01_0623 +
4638952-4639024,4640422-4640439,4641312-4641660,
4643917-4643985,4645587-4645722,4646835-4646870
Length = 226
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 18 RCSKCSDNFHKGCVAIPSTGVAP-RGWICPSCLAK 51
+C +CSD FH C+ + + C SC A+
Sbjct: 163 QCEECSDWFHPSCIGMTIKDAKKLEHFFCQSCTAE 197
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.139 0.447
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,065,479
Number of Sequences: 37544
Number of extensions: 230143
Number of successful extensions: 797
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 763
Number of HSP's gapped (non-prelim): 60
length of query: 209
length of database: 14,793,348
effective HSP length: 79
effective length of query: 130
effective length of database: 11,827,372
effective search space: 1537558360
effective search space used: 1537558360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 58 (27.5 bits)
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