GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001492-TA|BGIBMGA001492-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type,
IPR012294|Transcription factor TFIID, C-terminal/DNA glycosylase,
N-terminal
         (209 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    31   0.033
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            26   0.95 
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            26   0.95 
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   8.9  

>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
          binding protein protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 0.033
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 2  AKCGACGKFLSTADCA-RCSKCSDNFHKGCVAIP 34
          A C +C + L    C   C+ C   FH+GC  +P
Sbjct: 14 AICFSCAEPLEATGCIISCAYCDATFHRGCCKLP 47


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 155 NRQLFGTARQKGKDKGWKYVWTKDG 179
           N++     R +G+ + WK +W +DG
Sbjct: 39  NQRALNCYRLEGESREWKALWIRDG 63


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 155 NRQLFGTARQKGKDKGWKYVWTKDG 179
           N++     R +G+ + WK +W +DG
Sbjct: 39  NQRALNCYRLEGESREWKALWIRDG 63


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 83  DIVHAERIGAVRRHFTEGDENRPRILSVRLARRSVRDALLKGAR 126
           D  H+E  G    H  +G     R+L + L++ +    +L+G R
Sbjct: 369 DAAHSEMKG----HIKQGRRTHARLLRMELSKTANAPLMLEGVR 408


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.324    0.139    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,776
Number of Sequences: 2123
Number of extensions: 7286
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 209
length of database: 516,269
effective HSP length: 61
effective length of query: 148
effective length of database: 386,766
effective search space: 57241368
effective search space used: 57241368
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 46 (22.6 bits)