Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001492-TA|BGIBMGA001492-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type,
IPR012294|Transcription factor TFIID, C-terminal/DNA glycosylase,
N-terminal
(209 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ... 46 3e-05
AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical ... 38 0.007
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 35 0.037
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 35 0.037
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 35 0.037
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z81016-2|CAB02663.1| 246|Caenorhabditis elegans Hypothetical pr... 32 0.26
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr... 32 0.26
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr... 32 0.26
Z67990-7|CAA91938.1| 406|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 31 0.80
AF067622-3|ABD63225.1| 447|Caenorhabditis elegans Hypothetical ... 30 1.4
Z82077-2|CAB04940.1| 722|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr... 29 3.2
U42843-3|AAM75365.1| 310|Caenorhabditis elegans Skinhead protei... 29 3.2
U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protei... 29 3.2
U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protei... 29 3.2
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical pr... 28 4.3
U80836-7|AAB37893.3| 451|Caenorhabditis elegans Hypothetical pr... 28 4.3
S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein. 28 4.3
U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile (un... 28 5.6
Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical p... 27 7.4
>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
protein H20J04.2 protein.
Length = 1427
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVPRGDNAA 59
KC +C + + D CS+C + +H C + AP W+C SC A+ + +N A
Sbjct: 1114 KCRSCRRKAAAHDLVLCSECDNCYHLKCAKLDVNSDAPADWMCTSCRAQQRKVENEA 1170
>AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical
protein Y59A8A.2 protein.
Length = 613
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPR---GWICPSC 48
C C K +C +C ++H GC++ P T + R GWIC C
Sbjct: 529 CVVCRKSTEQHKQTQCDECHKSYHIGCLSPPLTRLPKRNNFGWICHEC 576
Score = 35.5 bits (78), Expect = 0.028
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 4 CGAC---GKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCL 49
CG C ++ D +C KC N H+ C G W C CL
Sbjct: 108 CGVCINQRNIVAAGDFLQCQKCGINVHESCYGTLPGGSDDASWYCEPCL 156
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 35.1 bits (77), Expect = 0.037
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 13 TADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVP 53
T++ C C ++H C+ P T + W CP C+ P
Sbjct: 337 TSNILLCDTCPSSYHAYCIDPPLTEIPEGEWSCPRCIIPEP 377
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 35.1 bits (77), Expect = 0.037
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 13 TADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVP 53
T++ C C ++H C+ P T + W CP C+ P
Sbjct: 337 TSNILLCDTCPSSYHAYCIDPPLTEIPEGEWSCPRCIIPEP 377
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 35.1 bits (77), Expect = 0.037
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 13 TADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVP 53
T++ C C ++H C+ P T + W CP C+ P
Sbjct: 337 TSNILLCDTCPSSYHAYCIDPPLTEIPEGEWSCPRCIIPEP 377
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 2 AKCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
+ CG+C + + TAD +C+ C ++H C + + + ++C SC
Sbjct: 83 SSCGSCQRMI-TADSRQCTTCRKSYHLSCDSSDVSSL--NNFVCISC 126
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSC 48
C CG A+ C +C ++H C+ P P+G W C C
Sbjct: 566 CEGCGTGGDEANLLLCDECDVSYHIYCMK-PLLDKIPQGPWRCQWC 610
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 2 AKCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
+ CG+C + + TAD +C+ C ++H C + + + ++C SC
Sbjct: 83 SSCGSCQRMI-TADSRQCTTCRKSYHLSCDSSDVSSL--NNFVCISC 126
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSC 48
C CG A+ C +C ++H C+ P P+G W C C
Sbjct: 566 CEGCGTGGDEANLLLCDECDVSYHIYCMK-PLLDKIPQGPWRCQWC 610
>Z81016-2|CAB02663.1| 246|Caenorhabditis elegans Hypothetical
protein F21G4.4 protein.
Length = 246
Score = 32.3 bits (70), Expect = 0.26
Identities = 14/45 (31%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C C K C C C D +H CV P W C C
Sbjct: 202 CPTCDKSSKFGSCG-CVGCGDWYHITCVGFKKAKEVPDKWACKYC 245
>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
T08G11.1b protein.
Length = 3185
Score = 32.3 bits (70), Expect = 0.26
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 141 TVRTVYLNERLSAYNRQLFGTARQKGKDKGWKYVWTKDGRIYIRRGDGTPALRIRVQAD 199
+V+ Y NE +S + + +KG+ + WK T R D +P ++++AD
Sbjct: 1799 SVQMSYYNESVSVWEPIIEPVENEKGEFERWKLAMTMKSRNKQDSSDSSPQTEVKIEAD 1857
>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
T08G11.1a protein.
Length = 3212
Score = 32.3 bits (70), Expect = 0.26
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 141 TVRTVYLNERLSAYNRQLFGTARQKGKDKGWKYVWTKDGRIYIRRGDGTPALRIRVQAD 199
+V+ Y NE +S + + +KG+ + WK T R D +P ++++AD
Sbjct: 1799 SVQMSYYNESVSVWEPIIEPVENEKGEFERWKLAMTMKSRNKQDSSDSSPQTEVKIEAD 1857
>Z67990-7|CAA91938.1| 406|Caenorhabditis elegans Hypothetical
protein F02D10.7 protein.
Length = 406
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCL 49
CG CG ST +CS C +FH+ C + T + C SC+
Sbjct: 68 CGTCGT--STPPMIKCSGCVHSFHRACFPMKLTEESKSH--CESCV 109
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 30.7 bits (66), Expect = 0.80
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 2 AKCGACGKFL----STADCARCSKCSDNFHKGCVAI-PSTGVAPRG-----WICPSC 48
A C C F+ ST C C + +H+ C I PS G W+CPSC
Sbjct: 858 ALCAGCHHFIMPGSSTLSCLY-HDCKNVYHRECTRISPSAATQMEGTPQVRWVCPSC 913
>AF067622-3|ABD63225.1| 447|Caenorhabditis elegans Hypothetical
protein F33E11.6b protein.
Length = 447
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSCLA 50
C C K + C +C FH CV + P+G WIC + A
Sbjct: 383 CSICNKPEKEDEIVFCDRCDRGFHTYCVGLKK---LPQGTWICDTYCA 427
>Z82077-2|CAB04940.1| 722|Caenorhabditis elegans Hypothetical
protein W09C5.5 protein.
Length = 722
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 4 CGACGKFLS--TADCARCSKCSDNFHKGC 30
C CG+ L+ +C C+ NFHK C
Sbjct: 112 CDFCGEMLTGLMRQGVKCKNCNGNFHKRC 140
>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical
protein C44B9.4 protein.
Length = 1150
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 7 CGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
CG S + C +C +FH C+ S+ + + C C
Sbjct: 62 CGICSSGGNILCCEQCPASFHLACIGYESSDLPDDNFYCNRC 103
>U42843-3|AAM75365.1| 310|Caenorhabditis elegans Skinhead protein
1, isoform b protein.
Length = 310
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 142 VRTVYLNERLSAYNRQLFGTARQKGKDK 169
++ V NE LS Y RQL R++GK+K
Sbjct: 262 LQQVLKNESLSEYQRQLIRKIRRRGKNK 289
>U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protein
1, isoform c protein.
Length = 533
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 142 VRTVYLNERLSAYNRQLFGTARQKGKDK 169
++ V NE LS Y RQL R++GK+K
Sbjct: 485 LQQVLKNESLSEYQRQLIRKIRRRGKNK 512
>U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protein
1, isoform a protein.
Length = 623
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 142 VRTVYLNERLSAYNRQLFGTARQKGKDK 169
++ V NE LS Y RQL R++GK+K
Sbjct: 575 LQQVLKNESLSEYQRQLIRKIRRRGKNK 602
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 4 CGACG-KFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C C + A+ C +C D FH CV + + + W C C
Sbjct: 310 CPVCSVAYTVGANMIGCDQCQDWFHWHCVGLTAEPTDSK-WFCTRC 354
>Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical
protein R53.3a protein.
Length = 543
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 3 KCGACGKFLSTAD---------CA----RCSKCSDNFHKGCVAIPSTGVAPRGWICPSCL 49
KCG C K S+A C+ RC C ++ + V GW CP+C
Sbjct: 160 KCGVCPKSFSSASGLKQHSHIHCSLKPFRCHLCPKSYTQFSNLCRHRRVHSDGWTCPTCQ 219
Query: 50 AKVP 53
+++P
Sbjct: 220 SQMP 223
>U80836-7|AAB37893.3| 451|Caenorhabditis elegans Hypothetical
protein B0432.13 protein.
Length = 451
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVPR 54
C C + L D C +H GC+ S +A + CPSC VP+
Sbjct: 13 CSICFEDLKQNDKISAIVCGHIYHHGCI---SQWIATKRQ-CPSCRRTVPK 59
>S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein.
Length = 581
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 3 KCGACGKFLSTAD---------CA----RCSKCSDNFHKGCVAIPSTGVAPRGWICPSCL 49
KCG C K S+A C+ RC C ++ + V GW CP+C
Sbjct: 160 KCGVCPKSFSSASGLKQHSHIHCSLKPFRCHLCPKSYTQFSNLCRHRRVHSDGWTCPTCQ 219
Query: 50 AKVP 53
+++P
Sbjct: 220 SQMP 223
>U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile
(unfertilizable) protein1 protein.
Length = 551
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 2 AKCGACGKFLSTADCARCSKCSDNFHK 28
AKC +D CSKC +N HK
Sbjct: 234 AKCDGINDCADASDEKNCSKCQNNAHK 260
>Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical
protein K08E3.6 protein.
Length = 681
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 1 MAKCGACGKFLSTADCARCSKCSDNFHKGC 30
M KC C L A +C C H+ C
Sbjct: 362 MRKCDKCATALKLATSMKCRDCHQVVHRSC 391
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.139 0.447
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,855,462
Number of Sequences: 27539
Number of extensions: 182331
Number of successful extensions: 622
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 33
length of query: 209
length of database: 12,573,161
effective HSP length: 78
effective length of query: 131
effective length of database: 10,425,119
effective search space: 1365690589
effective search space used: 1365690589
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 57 (27.1 bits)
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