Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001492-TA|BGIBMGA001492-PA|IPR001965|Zinc finger,
PHD-type, IPR011011|Zinc finger, FYVE/PHD-type,
IPR012294|Transcription factor TFIID, C-terminal/DNA glycosylase,
N-terminal
(209 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 43 1e-04
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ... 38 0.007
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 38 0.007
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 37 0.011
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 36 0.015
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ... 36 0.015
At5g24330.1 68418.m02867 PHD finger family protein / SET domain-... 36 0.015
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 36 0.020
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi... 35 0.035
At1g05380.1 68414.m00546 PHD finger transcription factor, putative 35 0.035
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 34 0.061
At5g36740.1 68418.m04402 PHD finger family protein 34 0.061
At5g36670.1 68418.m04388 PHD finger family protein 34 0.061
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 34 0.081
At4g14700.1 68417.m02259 replication control protein, putative s... 33 0.11
At2g02470.1 68415.m00186 PHD finger family protein contains Pfam... 33 0.11
At5g40590.1 68418.m04926 DC1 domain-containing protein predicted... 33 0.14
At2g17740.1 68415.m02055 DC1 domain-containing protein 33 0.14
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 33 0.19
At2g44390.1 68415.m05521 DC1 domain-containing protein EST match... 33 0.19
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 32 0.25
At2g44380.1 68415.m05520 DC1 domain-containing protein highly si... 32 0.25
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 32 0.32
At5g09790.1 68418.m01133 PHD finger family protein / SET domain-... 31 0.43
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 31 0.43
At2g28270.1 68415.m03431 DC1 domain-containing protein contains ... 31 0.43
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ... 31 0.75
At2g44370.1 68415.m05519 DC1 domain-containing protein highly si... 31 0.75
At2g28460.1 68415.m03457 DC1 domain-containing protein contains ... 31 0.75
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 30 0.99
At4g12620.1 68417.m01988 replication control protein, putative s... 30 0.99
At4g01920.1 68417.m00255 DC1 domain-containing protein similar t... 30 0.99
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 30 0.99
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ... 30 0.99
At5g43520.1 68418.m05321 DC1 domain-containing protein contains ... 30 1.3
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At5g42280.1 68418.m05146 DC1 domain-containing protein contains ... 29 1.7
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r... 29 1.7
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r... 29 1.7
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 29 1.7
At2g36720.1 68415.m04505 PHD finger transcription factor, putative 29 1.7
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 29 1.7
At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei... 29 1.7
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ... 29 2.3
At3g07000.1 68416.m00831 DC1 domain-containing protein contains ... 29 2.3
At3g02890.1 68416.m00284 PHD finger protein-related contains low... 29 2.3
At1g53340.1 68414.m06046 DC1 domain-containing protein contains ... 29 2.3
At5g59550.1 68418.m07462 zinc finger (C3HC4-type RING finger) fa... 29 3.0
At5g55780.1 68418.m06952 DC1 domain-containing protein contains ... 29 3.0
At5g54040.1 68418.m06721 DC1 domain-containing protein contains ... 29 3.0
At3g13270.1 68416.m01670 hypothetical protein contains similarit... 29 3.0
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t... 29 3.0
At1g35920.1 68414.m04461 hypothetical protein includes At5g34960... 29 3.0
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ... 28 4.0
At2g37800.1 68415.m04641 DC1 domain-containing protein contains ... 28 4.0
At2g14450.1 68415.m01617 hypothetical protein includes At5g34960... 28 4.0
At1g14770.2 68414.m01766 expressed protein 28 4.0
At1g14770.1 68414.m01765 expressed protein 28 4.0
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ... 28 5.3
At5g23910.1 68418.m02808 kinesin motor protein-related 28 5.3
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 28 5.3
At3g42110.1 68416.m04323 hypothetical protein 28 5.3
At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa... 27 7.0
At1g06240.1 68414.m00660 expressed protein contains Pfam domain,... 27 7.0
At5g61100.1 68418.m07666 hypothetical protein 27 9.2
At5g54030.1 68418.m06720 DC1 domain-containing protein contains ... 27 9.2
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960... 27 9.2
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ... 27 9.2
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 27 9.2
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ... 27 9.2
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ... 27 9.2
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 27 9.2
At2g02610.1 68415.m00200 DC1 domain-containing protein contain... 27 9.2
At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger) fa... 27 9.2
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ... 27 9.2
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 27 9.2
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 43.2 bits (97), Expect = 1e-04
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAK 51
C CG+ DC C C D +H C G+ W C C +K
Sbjct: 243 CKLCGEKAEARDCLACDHCEDMYHVSCAQPGGKGMPTHSWYCLDCTSK 290
Score = 30.7 bits (66), Expect = 0.75
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 19 CSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKV 52
C C D +H C+ P V W C +C A +
Sbjct: 420 CDGCDDAYHIYCMRPPCESVPNGEWFCTACKAAI 453
>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 305
Score = 37.5 bits (83), Expect = 0.007
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
CGAC K + + + C +C NFHK CV P
Sbjct: 125 CGACEKIVLSTNYFACLQCQKNFHKECVQSP 155
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/47 (34%), Positives = 18/47 (38%)
Query: 2 AKCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
A CGACG+ S C C FH CV W+C C
Sbjct: 84 ASCGACGRPESIELVVVCDACERGFHMSCVNDGVEAAPSADWMCSDC 130
Score = 34.7 bits (76), Expect = 0.046
Identities = 13/46 (28%), Positives = 17/46 (36%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCL 49
C CG C C +H C+ P + W CPSC+
Sbjct: 1290 CKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLIRIPDGNWYCPSCV 1335
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3
(PICKLE) identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 36.7 bits (81), Expect = 0.011
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLA 50
C ACG+ + + C+ C+ FH C+ P + W CP C++
Sbjct: 52 CQACGE---STNLVSCNTCTYAFHAKCLVPPLKDASVENWRCPECVS 95
>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 557
Score = 36.3 bits (80), Expect = 0.015
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 4 CGACGKFLSTADCA--RCSKCSDNFHKGCVAIPSTGVAPRGWICPS 47
C CG S A+ C +C FH C+ S V+ RGW C S
Sbjct: 301 CDICGSMESPANSKLMACEQCQRRFHLTCLKEDSCIVSSRGWFCSS 346
>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 695
Score = 36.3 bits (80), Expect = 0.015
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 1 MAKCGAC-GKFLSTADCARCSKCSDNFHKGCVAIP 34
+++CGAC GK L T+ C +C FH+ CV P
Sbjct: 153 ISQCGACKGKMLDTSKDYACLQCQRKFHRECVESP 187
>At5g24330.1 68418.m02867 PHD finger family protein / SET
domain-containing protein contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain
Length = 349
Score = 36.3 bits (80), Expect = 0.015
Identities = 15/45 (33%), Positives = 16/45 (35%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C C A C KC FH C+ V W CPSC
Sbjct: 35 CEECSSGKQPAKLLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 79
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/48 (33%), Positives = 18/48 (37%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAK 51
C C CS+C FH CV P + WIC SC K
Sbjct: 704 CQICSGEDERKKLLHCSECDKLFHPDCVVPPVIDLPSEAWICFSCKEK 751
>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
finger family protein contains Pfam profiles: PF01448
ELM2 domain, PF00628 PHD-finger
Length = 631
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAP-RGWICPSCL 49
+C C K + C +C + +H C + VA W+CPSCL
Sbjct: 411 QCKHCDKPGTVEKMLICDECEEAYHTRCCGVQMKDVAEIDEWLCPSCL 458
>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
Length = 600
Score = 35.1 bits (77), Expect = 0.035
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSCLAK 51
CG CG D C C +H+ C+ + V P G W CP+C K
Sbjct: 90 CGICG---DGGDLICCDGCPSTYHQNCLGMQ---VLPSGDWHCPNCTCK 132
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 34.3 bits (75), Expect = 0.061
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAP 40
+CGACG+ +A C C FHK CV P + P
Sbjct: 90 RCGACGRPTLSATYYACLICEKMFHKECVESPFEIIHP 127
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 34.3 bits (75), Expect = 0.061
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSCLAKVPRGDNAA 59
CG CG D C C FH+ C+ I P G W C +C K D AA
Sbjct: 653 CGICG---DGGDLICCDGCPSTFHQSCLDIKK---FPSGAWYCYNCSCKFCEKDEAA 703
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 34.3 bits (75), Expect = 0.061
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSCLAKVPRGDNAA 59
CG CG D C C FH+ C+ I P G W C +C K D AA
Sbjct: 653 CGICG---DGGDLICCDGCPSTFHQSCLDIKK---FPSGAWYCYNCSCKFCEKDEAA 703
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 33.9 bits (74), Expect = 0.081
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSC 48
CG CG + C C FH+ C+ S V P G W C SC
Sbjct: 729 CGVCG---DGGELICCDNCPSTFHQACL---SMQVLPEGSWYCSSC 768
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/48 (31%), Positives = 17/48 (35%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAK 51
C C K + C C FH C+ P V WIC C K
Sbjct: 166 CQICFKSHTNTIMIECDDCLGGFHLNCLKPPLKEVPEGDWICQFCEVK 213
>At2g02470.1 68415.m00186 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 256
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 2 AKCGACGKFLSTAD-CARCSKCSDNFHKGCVAI-PSTGVAPRGWICPSCLAKVPR 54
A CGACG T + C C FH CV I P+ + + CP+C K R
Sbjct: 201 AVCGACGDNYGTDEFWICCDACEKWFHGKCVKITPAKAEHIKHYKCPTCSNKRAR 255
>At5g40590.1 68418.m04926 DC1 domain-containing protein predicted
protein, Arabidopsis thaliana
Length = 234
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPST 36
C ACG++ S+ CS C + H GCV++P T
Sbjct: 86 CNACGEYGSSFTY-NCSICQYDVHVGCVSMPET 117
>At2g17740.1 68415.m02055 DC1 domain-containing protein
Length = 248
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPST 36
C ACG++ + CS C + H GCV++P T
Sbjct: 88 CDACGEY-GSGFTYNCSICQYDVHVGCVSVPET 119
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 32.7 bits (71), Expect = 0.19
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
CG C ++ C +C +C HKGC ++P
Sbjct: 282 CGGCILPINDDPCYKCVECDFCLHKGCASLP 312
>At2g44390.1 68415.m05521 DC1 domain-containing protein EST
matches across the predicted intron; maybe a pseudo
gene; highly similar to GP|2435515|AF024504; contains
Pfam profile PF03107: DC1 domain
Length = 209
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPST 36
C ACG++ + CS+C + H GC IP T
Sbjct: 55 CDACGEY-GSGFTYNCSECQYDLHVGCAFIPET 86
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 32.3 bits (70), Expect = 0.25
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
+CG C + +A C +C FHK CV P
Sbjct: 131 QCGGCRDSMLSASYYACLQCEKKFHKECVESP 162
>At2g44380.1 68415.m05520 DC1 domain-containing protein highly
similar to GP|2435515|AF024504; contains Pfam profile
PF03107: DC1 domain
Length = 247
Score = 32.3 bits (70), Expect = 0.25
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPST 36
C ACG++ + CS+C + H GC IP T
Sbjct: 92 CDACGEY-GSGFTYNCSECQYDVHVGCAFIPET 123
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 31.9 bits (69), Expect = 0.32
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 15 DCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
D C C +H C+ P + WICP C
Sbjct: 72 DLLCCDSCPRTYHTACLNPPLKRIPNGKWICPKC 105
>At5g09790.1 68418.m01133 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 352
Score = 31.5 bits (68), Expect = 0.43
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRG-WICPSCLAKVP 53
C CG + C KC FH C+ P P G W+C C + P
Sbjct: 67 CEKCGSGEGDDELLLCDKCDRGFHMKCLR-PIVVRVPIGTWLCVDCSDQRP 116
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 31.5 bits (68), Expect = 0.43
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
+CG C + ++ C +C + FHK CV P
Sbjct: 124 ECGGCEESKTSRSYYACLECGNKFHKQCVESP 155
>At2g28270.1 68415.m03431 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 248
Score = 31.5 bits (68), Expect = 0.43
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
C ACG++ +A CS+C + H GC +P
Sbjct: 92 CDACGEY-GSAFTYHCSECKYHVHVGCAFVP 121
>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 599
Score = 30.7 bits (66), Expect = 0.75
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 2 AKCGACGKFLSTADCA---RCSKCSDNFHKGCVAIP 34
+ C CGK +ST+ C+ C +FH+ CV IP
Sbjct: 38 SNCFTCGKQVSTSSRGFHYHCTICDVDFHEECVNIP 73
>At2g44370.1 68415.m05519 DC1 domain-containing protein highly
similar to GP|2435515|AF024504
Length = 250
Score = 30.7 bits (66), Expect = 0.75
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPST 36
C ACG++ + CS C + H GCV++P +
Sbjct: 88 CDACGEY-GSGFTYNCSICQYDVHVGCVSMPES 119
>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 704
Score = 30.7 bits (66), Expect = 0.75
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
C ACG S+ C C HK C+++P
Sbjct: 284 CNACGLSHSSCPLYMCPPCDFVIHKSCISLP 314
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 30.3 bits (65), Expect = 0.99
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAK 51
+C CG T C C C +H C+ + + W CP C K
Sbjct: 415 ECRLCGMD-GTLLC--CDGCPLAYHSRCIGVVKMYIPDGPWYCPECTIK 460
>At4g12620.1 68417.m01988 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1)[Homo sapiens]
SWISS-PROT:Q13415
Length = 813
Score = 30.3 bits (65), Expect = 0.99
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAK 51
C C K T C C FH C+ P V WIC C K
Sbjct: 169 CQICFKS-DTNIMIECDDCLGGFHLKCLKPPLKEVPEGDWICQFCEVK 215
>At4g01920.1 68417.m00255 DC1 domain-containing protein similar to
A. thaliana CHP-rich proteins
Length = 658
Score = 30.3 bits (65), Expect = 0.99
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPS 35
CG CG+F + +D C C K C PS
Sbjct: 28 CGCCGRFEAISDGYYCKTCDFFVRKNCADEPS 59
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 30.3 bits (65), Expect = 0.99
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 4 CGACG-KFLSTA-DCARCSK-CSDNFHKGCVAIP--STGVAP--RGWICPSCLAK 51
C CG K LS D C C FH+ C+ P + P GW+CP C K
Sbjct: 268 CAKCGSKDLSVDNDIILCDGFCDRGFHQYCLEPPLRKEDIPPDDEGWLCPGCDCK 322
>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
contains Pfam profile: PF01363 FYVE zinc finger
Length = 601
Score = 30.3 bits (65), Expect = 0.99
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 1 MAKCGACGK----FLSTADCARCSKC-SDNFHKGCVAIPSTGVAPRGWICPSCLAKV 52
++KC +CG F+ C C D +G +A+ + AP+ +C C+A+V
Sbjct: 458 VSKCTSCGSDFGAFIRRHHCRNCGDVFCDKCTQGRIALTAEDNAPQVRVCDRCMAEV 514
>At5g43520.1 68418.m05321 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 250
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPST 36
C AC ++ + CS C+ + H GC IP T
Sbjct: 97 CDACDQY-GSGFSYHCSNCNYSLHVGCAFIPET 128
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCV-AIPSTGVAPRGWICPSC 48
C C + C C +H C+ + P T A W+CP C
Sbjct: 15 CMRCKSMPPPEESLTCGTCVTPWHVSCLLSPPETLSATLQWLCPDC 60
>At5g42280.1 68418.m05146 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 694
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 4 CGACGKFLSTAD--CARCSKCSDNFHKGCVAIP 34
C ACG LS D C CS H+ C+ +P
Sbjct: 267 CDACGLSLSETDDLVYACLPCSHMVHRSCIYLP 299
>At5g35210.2 68418.m04175 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1409
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
+C CG T C C C +H C+ + + W CP C
Sbjct: 413 ECRICGMD-GTLLC--CDGCPLAYHSRCIGVVKMYIPDGPWFCPEC 455
>At5g35210.1 68418.m04174 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1576
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
+C CG T C C C +H C+ + + W CP C
Sbjct: 413 ECRICGMD-GTLLC--CDGCPLAYHSRCIGVVKMYIPDGPWFCPEC 455
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 19 CSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C C +H CV + S + W CP C
Sbjct: 623 CDGCPAAYHSKCVGLASHLLPEGDWYCPEC 652
>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
Length = 1007
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 19 CSKCSDNFHKGCVAIPSTGVAPRG-WICPSC 48
C C FH CV++PS PRG W C C
Sbjct: 630 CDSCPRAFHIECVSLPS---IPRGNWHCKYC 657
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 4 CGACGKFLSTAD--CARCSKCSDNFHKGCVAIP 34
CGACG LS A+ C C+ H+ C+ +P
Sbjct: 221 CGACGLSLSDAEDLVYACLPCNLLVHRSCIYLP 253
>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 455
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C CG +++ A +C +C + HK T P W CPSC
Sbjct: 382 CTGCG-YMNFASNKQCRECREQRHK-------TLAEPGDWECPSC 418
>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 656
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
CGAC + D C C FHK CV P
Sbjct: 143 CGACERSKIGTDYYICLTCDLMFHKECVESP 173
>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 574
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
CGACGK+L C+ C N C +P
Sbjct: 397 CGACGKYLHYV--LSCTVCEFNLGMDCATLP 425
>At3g02890.1 68416.m00284 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 963
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
CG G+ A C+RCS ++ H C+ + V W+C C
Sbjct: 208 CGDAGREDLLAICSRCSDGAE--HTYCMRVMLKKVPKGYWLCEEC 250
>At1g53340.1 68414.m06046 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 667
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
C AC C C D FHK CV P
Sbjct: 127 CRACTTIEQGTSYYVCVTCGDQFHKECVGAP 157
>At5g59550.1 68418.m07462 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 407
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 2 AKCGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKVPRGDN 57
A C C + T AR C FH C+ +P + CP C ++P N
Sbjct: 197 ANCAVCTEIFETETEAREMPCKHLFHDDCI-VPWLSIRNS---CPVCRFELPSEPN 248
>At5g55780.1 68418.m06952 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 685
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
C AC + + C +C FHK CV P
Sbjct: 136 CRACNGNIFSTSYFTCLQCQGKFHKECVESP 166
>At5g54040.1 68418.m06721 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 596
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
+C C ++ C RC +C HK C +P
Sbjct: 314 RCRCCVLAINGDPCYRCVECDFILHKACANLP 345
>At3g13270.1 68416.m01670 hypothetical protein contains similarity
to replication protein A1
Length = 570
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 16 CARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C C+K + H G + + G PR W C SC
Sbjct: 295 CRACNKKVTHIHSGVHGVNNKGKKPRFW-CDSC 326
>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
hypothetical protein GI:4204272 from [Arabidopsis
thaliana] contains weak PHD zinc finger motifs contains
weak PHD zinc finger motifs DC1 domain, a divergent
protein kinase C domain of unknown function.
Length = 684
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 4 CGACGKFLS-TADCA-RCSKCSDNFHKGCVAIP 34
C ACG LS T D C CS H+ C+ +P
Sbjct: 263 CDACGLSLSDTIDLIYACLPCSHMIHRSCIYLP 295
>At1g35920.1 68414.m04461 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 567
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 16 CARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKV 52
C C+K ++ H G + + G PR W C +C + V
Sbjct: 293 CKTCNKKVNHIHAGVNGVNNKGKKPRFW-CDTCTSVV 328
>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 556
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPS 35
C ACG +++ C +C H+ C+ +PS
Sbjct: 142 CDACGSVDNSSYPCTCLQCCFIIHRDCIDLPS 173
>At2g37800.1 68415.m04641 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 396
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPST 36
C C K RC++C N H C PST
Sbjct: 165 CDGC-KTYGFGKTYRCTRCDYNLHDHCATCPST 196
>At2g14450.1 68415.m01617 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 544
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 15 DCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
+C C+K ++ H G + + G PR W C +C
Sbjct: 282 NCKTCNKKVNHIHAGVNGVNNKGKKPRFW-CETC 314
>At1g14770.2 68414.m01766 expressed protein
Length = 429
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C C K + C+R S+C+ HK C+ P ++CP C
Sbjct: 348 CWKCEKEGTLLICSR-SECAAKVHKECLNCPVNVDEYGNFLCPLC 391
>At1g14770.1 68414.m01765 expressed protein
Length = 429
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C C K + C+R S+C+ HK C+ P ++CP C
Sbjct: 348 CWKCEKEGTLLICSR-SECAAKVHKECLNCPVNVDEYGNFLCPLC 391
>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 519
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
C ACG + + C +C HKGC+ +P
Sbjct: 145 CNACG-LVGDRNPYVCLECDFMLHKGCINLP 174
>At5g23910.1 68418.m02808 kinesin motor protein-related
Length = 665
Score = 27.9 bits (59), Expect = 5.3
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 115 RSVRDALLKGARVRRYLST-TDLDVPGTVRTVYLNERLSAYN-RQLFGTARQKGKDKGWK 172
R ++D L KG+ + ++ T L T R +N SA R+LFG A K K
Sbjct: 265 RMLKDCL-KGSNITLLITCLTVLRGNVTERKTKINTATSAIKARKLFGEANDSVKCKNSS 323
Query: 173 YVWTKDGRIYIRRGDGTPALRIRVQADLKKHFGP 206
++ +++G T + + VQA K P
Sbjct: 324 KKVEGKAKMVLKKGISTSKVVLSVQASSPKEVNP 357
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 4 CGA-CGKFLSTADCARCSKCSDNFHKGCVAIPS 35
C A CGK +C +C FH CV PS
Sbjct: 136 CDAKCGKISGNEFAYKCQECDLTFHVDCVWHPS 168
>At3g42110.1 68416.m04323 hypothetical protein
Length = 448
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 16 CARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C C+K ++ H G + + G PR W C +C
Sbjct: 230 CKTCNKKVNHIHAGVHGVNNKGKKPRFW-CDTC 261
>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 622
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C C + + C C +H C+ S + W CP C
Sbjct: 15 CMRCQVTPPSEETLTCGTCVTPWHVSCLLPESLASSTGDWECPDC 59
>At1g06240.1 68414.m00660 expressed protein contains Pfam domain,
PF04305: Protein of unknown function (DUF455)
Length = 383
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 40 PRGWICPSCLAKVPRGDN 57
PR W PSC +V +GDN
Sbjct: 333 PRDWYDPSCGTEVDKGDN 350
>At5g61100.1 68418.m07666 hypothetical protein
Length = 227
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 4 CGACGKFLSTADCARCSKCSDNF-HKGCVAIPSTGVAPRGWICPSC 48
C CG + C C D H C + V PR WIC C
Sbjct: 34 CEVCGSDANELLMMTCFMCRDTREHTYCARVMFQRV-PRLWICEEC 78
>At5g54030.1 68418.m06720 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 419
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
+C C ++ C RC +C+ H+ C +P
Sbjct: 299 RCRCCILAINGDPCYRCVECNFILHEACANLP 330
>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 1033
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 16 CARCSKCSDNFHKGCVAIPSTGVAPRGWICPSCLAKV 52
C C+K ++ H G + + G P+ W C +C + V
Sbjct: 282 CKTCNKKVNHIHAGVNGVNNKGKKPKFW-CDTCKSVV 317
>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 602
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
C ACG C +C HK CV +P
Sbjct: 187 CDACGLINLLDPSYACHQCDYMVHKSCVDLP 217
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICP 46
C CG C +C D +H C V+ ++CP
Sbjct: 216 CEGCGTLGDPKKFMFCKRCDDAYHCDCQHPRHKNVSSGPYLCP 258
>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 1 MAKCGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
+ C ACG + C +C+ H+ C+ +P
Sbjct: 223 LVPCDACGLVNALEPSYACFQCNYMIHQNCIDLP 256
>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 661
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
CGAC + + C C FHK CV P
Sbjct: 145 CGACERSKIGTNYYVCLTCDLMFHKECVESP 175
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
+C +C D C+ C FHK CV P
Sbjct: 118 ECYSCSIQTIGTDYYFCATCDKRFHKECVECP 149
>At2g02610.1 68415.m00200 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 3 KCGACGKFLSTADCARCSKCSDNFHKGCVAIP 34
+C +C D C+ C FHK CV P
Sbjct: 118 ECYSCSIQTIGTDYYFCATCDKRFHKECVECP 149
>At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 623
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 4 CGACGKFLSTADCARCSKCSDNFHKGCVAIPSTGVAPRGWICPSC 48
C C + + C C +H C+ S + W CP C
Sbjct: 15 CMRCQVNPPSEETLTCGTCVTPWHVSCLLPESLASSTGDWECPDC 59
>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 3 KCGACG-KFLSTADCARCSKCSDNFHKGCVAIP 34
KC CG +F + +D C KC FHK C P
Sbjct: 25 KC--CGLQFKTISDGYNCRKCRYFFHKSCSNCP 55
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 4 CGACGKFLS-TADCA-RCSKCSDNFHKGCVAIP 34
C ACG L+ T D C CS H+ C+ +P
Sbjct: 260 CDACGLSLNDTEDLVYSCLPCSRMVHRSCIYLP 292
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.324 0.139 0.447
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,629,019
Number of Sequences: 28952
Number of extensions: 169597
Number of successful extensions: 741
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 114
length of query: 209
length of database: 12,070,560
effective HSP length: 78
effective length of query: 131
effective length of database: 9,812,304
effective search space: 1285411824
effective search space used: 1285411824
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 57 (27.1 bits)
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