Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001491-TA|BGIBMGA001491-PA|IPR002557|Chitin binding
Peritrophin-A
         (222 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26250.1 68416.m03275 DC1 domain-containing protein contains ...    32   0.36 
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    29   1.9  
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ...    28   5.8  
At1g45243.1 68414.m05188 DC1 domain-containing protein contains ...    28   5.8  

>At3g26250.1 68416.m03275 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 490

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 167 SGKTLSLACPS----NLFYDPQKERCDFPANVSCEARVAPVFLPPLNKH 211
           S + +  ACPS      FY+  +  CDF  +V C AR++   L P + H
Sbjct: 249 SDRDICSACPSLCIAGFFYECSERNCDFRLHVQC-ARISEPLLHPSHMH 296


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 158 VCSHYHMCVSGKTLSLACPSNL----FYDPQKERCDFPANVSCEARVAPV 203
           V  +Y++ V    +  ACPS L    FY   ++ CDF  +V C     P+
Sbjct: 481 VTEYYNVMVHRSQVCSACPSLLRACFFYKCDEQDCDFQLHVQCAVVSEPL 530


>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 922

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 175 CPSNLFYDPQKERCDFPANVSCEARVAPVFLPPLNKH 211
           C S  FY   K  CDF  +V C A ++   L P + H
Sbjct: 695 CISGFFYKCSKIDCDFRLHVQC-ATISEPLLHPSHMH 730


>At1g45243.1 68414.m05188 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 263

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 172 SLACPSNLFYDPQKERCDFPANVSCEARVAPV 203
           S  C    FY+  KE CDF  +V C     P+
Sbjct: 59  SWLCKVGFFYECGKEGCDFQLHVQCATISEPL 90


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.136    0.481 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,847,200
Number of Sequences: 28952
Number of extensions: 233767
Number of successful extensions: 385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 8
length of query: 222
length of database: 12,070,560
effective HSP length: 78
effective length of query: 144
effective length of database: 9,812,304
effective search space: 1412971776
effective search space used: 1412971776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)