GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001491-TA|BGIBMGA001491-PA|IPR002557|Chitin binding
Peritrophin-A
         (222 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357...    28   5.3  
01_05_0626 + 23797278-23797618,23797629-23798097                       28   5.3  

>01_07_0242 +
           42234217-42234320,42234708-42235029,42235377-42235778,
           42235921-42236265,42236785-42236854,42237098-42237173,
           42237309-42237459
          Length = 489

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 126 ENVNTGPCNCDPKQALSLCAQEGSNGKLVAH 156
           ++ N  P  CD ++A SL  +E S GK ++H
Sbjct: 315 QSQNVDPVYCDDRRAASLKMEEPSQGKDLSH 345


>01_05_0626 + 23797278-23797618,23797629-23798097
          Length = 269

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 146 QEGSNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVSCEARVAPVFL 205
           +E S   L  H +CS      SG        + +F +     C  P  V  EAR +PV  
Sbjct: 95  EESSPISLDLHLICSEEDPIWSGCHDESRVQATVFSNGTNGWCHLPW-VDIEARASPVAP 153

Query: 206 PPLNKHW 212
              NKHW
Sbjct: 154 HDGNKHW 160


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.136    0.481 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,267,246
Number of Sequences: 37544
Number of extensions: 288609
Number of successful extensions: 441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 2
length of query: 222
length of database: 14,793,348
effective HSP length: 79
effective length of query: 143
effective length of database: 11,827,372
effective search space: 1691314196
effective search space used: 1691314196
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)