GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001490-TA|BGIBMGA001490-PA|IPR001179|Peptidylprolyl
isomerase, FKBP-type
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...   109   5e-25
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...   106   6e-24
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    84   4e-17
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   8.2  

>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score =  109 bits (263), Expect = 5e-25
 Identities = 60/110 (54%), Positives = 73/110 (66%), Gaps = 2/110 (1%)

Query: 292 KALSGGVQIEDLKLGNGPVAKPGKVVMVYYEGRLKQNNKMFDNCLKGPGFKFRLGAKEVI 351
           + L GGV + D+K G+G  A  GK V + Y G+L +N K+FD   KG  F F LG  EVI
Sbjct: 253 RTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKL-ENGKVFDKNTKGKPFAFILGRGEVI 311

Query: 352 SGWDVGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNSTLVFEVELKNV 401
            GWDVGV+GM+ GG+RKI  P  MAYG + S P IP NSTLVFEV+L  V
Sbjct: 312 RGWDVGVAGMQEGGERKITIPAPMAYGNQ-SIPGIPKNSTLVFEVKLVRV 360



 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 35  NEPCQVMVVVDGKNFLVCTLQKNKCIQVPLDLYFKTGDSIAFLTNGKCNVHLTG 88
           +E  Q ++    + F++CTL+     Q PL+L    GD + F  +G   +HL+G
Sbjct: 66  DEQMQELLEESQREFVLCTLKPGSLYQQPLNLTITPGDEVFFSASGDATIHLSG 119


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score =  106 bits (254), Expect = 6e-24
 Identities = 56/108 (51%), Positives = 70/108 (64%), Gaps = 2/108 (1%)

Query: 291 KKALSGGVQIEDLKLGNGPVAKPGKVVMVYYEGRLKQNNKMFDNCLKGPGFKFRLGAKEV 350
           K+ L G V ++D   G+GP AK  K V + Y GRL  N K+FD  + G  F F LG +EV
Sbjct: 253 KQVLEGNVTVQDKVKGDGPAAKRKKRVSMRYIGRLT-NGKVFDKNITGKPFTFNLGLEEV 311

Query: 351 ISGWDVGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNSTLVFEVEL 398
           I GWDVG+ GM+VGG+R I  P  MAYG+K  P  IP NS LVF+V+L
Sbjct: 312 IKGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKL 358



 Score = 33.9 bits (74), Expect = 0.041
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 47  KNFLVCTLQKNKCIQVPLDLYFKTGDSIAF-LTNGKCNVHLTG 88
           + F +CTL+K    Q P+D+ F  G+ + F    G   V+L+G
Sbjct: 77  EKFTLCTLKKGSVYQQPIDIIFSPGEEVFFERVGGDIPVYLSG 119


>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 83.8 bits (198), Expect = 4e-17
 Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 3/104 (2%)

Query: 297 GVQIEDLKLGNGP-VAKPGKVVMVYYEGRLKQNNKMFDNCL-KGPGFKFRLGAKEVISGW 354
           GV+ + +  GNG    KPG  + ++Y G L  N K FD+ + +G  F   +G  ++I GW
Sbjct: 2   GVEKQVISSGNGQDFPKPGDRITMHYTGTLT-NGKKFDSSVDRGSPFVCTIGVGQLIRGW 60

Query: 355 DVGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNSTLVFEVEL 398
           D GV  M +G K K+   P   YG +G P +IPPNSTL+F+VEL
Sbjct: 61  DEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVEL 104


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 10   NKRYTQVVEKPFHISQ-----AAMDTSTGDNEPCQVMV 42
            N+RY Q+VE  F   Q     A    S G N PC+ +V
Sbjct: 1233 NRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVV 1270


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,665
Number of Sequences: 5004
Number of extensions: 40800
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 7
length of query: 402
length of database: 2,362,478
effective HSP length: 74
effective length of query: 328
effective length of database: 1,992,182
effective search space: 653435696
effective search space used: 653435696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)