BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001490-TA|BGIBMGA001490-PA|IPR001179|Peptidylprolyl isomerase, FKBP-type (402 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0) 79 8e-15 SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 6e-11 SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 30 2.9 SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1) 29 5.1 SB_37230| Best HMM Match : PAZ (HMM E-Value=0.035) 29 6.7 >SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0) Length = 266 Score = 78.6 bits (185), Expect = 8e-15 Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 2/90 (2%) Query: 314 GKVVMVYYEGRLKQNNKMFDNCL-KGPGFKFRLGAKEVISGWDVGVSGMKVGGKRKIICP 372 G + ++Y GRL NK FD+ L +G F F LG VI GW+ G+ M +G KRK+ P Sbjct: 45 GDTLSMHYTGRLANGNK-FDSSLDRGKTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIP 103 Query: 373 PGMAYGAKGSPPVIPPNSTLVFEVELKNVK 402 P +AYG G+ IPP++TL +VEL ++ Sbjct: 104 PHLAYGENGAGAAIPPHATLYMDVELVEIQ 133 >SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 299 Score = 65.7 bits (153), Expect = 6e-11 Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 9/99 (9%) Query: 312 KPGKVVMVYYEGRLKQNNKMFDNCL---KG-PGFKFRLGAKEVISGWDVGVSGMKVGGKR 367 K G V+V+Y G + Q+ +FD KG F+F +G VI G++ GV+GM VG KR Sbjct: 116 KVGDHVVVHYTGWM-QDGSLFDTTRDHRKGYQPFEFTIGGGTVIKGFEQGVTGMCVGQKR 174 Query: 368 KIICPPGMAYGAKGSPPVIP----PNSTLVFEVELKNVK 402 KI+ PP +AYG KGS V N+TL + +EL +V+ Sbjct: 175 KIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLELFDVR 213 >SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) Length = 3397 Score = 30.3 bits (65), Expect = 2.9 Identities = 15/39 (38%), Positives = 19/39 (48%) Query: 9 PNKRYTQVVEKPFHISQAAMDTSTGDNEPCQVMVVVDGK 47 P K T+V E H + DT D+E + V VDGK Sbjct: 1711 PQKTSTEVPEPAKHFKEEIQDTHGEDDEEVEEFVEVDGK 1749 >SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1) Length = 782 Score = 29.5 bits (63), Expect = 5.1 Identities = 15/39 (38%), Positives = 18/39 (46%) Query: 9 PNKRYTQVVEKPFHISQAAMDTSTGDNEPCQVMVVVDGK 47 P K T+V E H DT D+E + V VDGK Sbjct: 242 PQKTSTEVPEPAKHFKDEIQDTHGKDDEEVEEFVEVDGK 280 >SB_37230| Best HMM Match : PAZ (HMM E-Value=0.035) Length = 167 Score = 29.1 bits (62), Expect = 6.7 Identities = 11/44 (25%), Positives = 23/44 (52%) Query: 351 ISGWDVGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNSTLVF 394 + + + + V + +++ PP + YG K S P+ P +T V+ Sbjct: 74 VKDFSISIGKNMVELQGRVLPPPKLVYGGKQSSPITPKGATDVY 117 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.316 0.136 0.402 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,991,821 Number of Sequences: 59808 Number of extensions: 306702 Number of successful extensions: 453 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 448 Number of HSP's gapped (non-prelim): 5 length of query: 402 length of database: 16,821,457 effective HSP length: 84 effective length of query: 318 effective length of database: 11,797,585 effective search space: 3751632030 effective search space used: 3751632030 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits) S2: 61 (28.7 bits)
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