GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001490-TA|BGIBMGA001490-PA|IPR001179|Peptidylprolyl
isomerase, FKBP-type
         (402 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                       79   8e-15
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   6e-11
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              30   2.9  
SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)                      29   5.1  
SB_37230| Best HMM Match : PAZ (HMM E-Value=0.035)                     29   6.7  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score = 78.6 bits (185), Expect = 8e-15
 Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 2/90 (2%)

Query: 314 GKVVMVYYEGRLKQNNKMFDNCL-KGPGFKFRLGAKEVISGWDVGVSGMKVGGKRKIICP 372
           G  + ++Y GRL   NK FD+ L +G  F F LG   VI GW+ G+  M +G KRK+  P
Sbjct: 45  GDTLSMHYTGRLANGNK-FDSSLDRGKTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIP 103

Query: 373 PGMAYGAKGSPPVIPPNSTLVFEVELKNVK 402
           P +AYG  G+   IPP++TL  +VEL  ++
Sbjct: 104 PHLAYGENGAGAAIPPHATLYMDVELVEIQ 133


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 65.7 bits (153), Expect = 6e-11
 Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 9/99 (9%)

Query: 312 KPGKVVMVYYEGRLKQNNKMFDNCL---KG-PGFKFRLGAKEVISGWDVGVSGMKVGGKR 367
           K G  V+V+Y G + Q+  +FD      KG   F+F +G   VI G++ GV+GM VG KR
Sbjct: 116 KVGDHVVVHYTGWM-QDGSLFDTTRDHRKGYQPFEFTIGGGTVIKGFEQGVTGMCVGQKR 174

Query: 368 KIICPPGMAYGAKGSPPVIP----PNSTLVFEVELKNVK 402
           KI+ PP +AYG KGS  V       N+TL + +EL +V+
Sbjct: 175 KIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLELFDVR 213


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 9    PNKRYTQVVEKPFHISQAAMDTSTGDNEPCQVMVVVDGK 47
            P K  T+V E   H  +   DT   D+E  +  V VDGK
Sbjct: 1711 PQKTSTEVPEPAKHFKEEIQDTHGEDDEEVEEFVEVDGK 1749


>SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)
          Length = 782

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)

Query: 9   PNKRYTQVVEKPFHISQAAMDTSTGDNEPCQVMVVVDGK 47
           P K  T+V E   H      DT   D+E  +  V VDGK
Sbjct: 242 PQKTSTEVPEPAKHFKDEIQDTHGKDDEEVEEFVEVDGK 280


>SB_37230| Best HMM Match : PAZ (HMM E-Value=0.035)
          Length = 167

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 351 ISGWDVGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNSTLVF 394
           +  + + +    V  + +++ PP + YG K S P+ P  +T V+
Sbjct: 74  VKDFSISIGKNMVELQGRVLPPPKLVYGGKQSSPITPKGATDVY 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,991,821
Number of Sequences: 59808
Number of extensions: 306702
Number of successful extensions: 453
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 5
length of query: 402
length of database: 16,821,457
effective HSP length: 84
effective length of query: 318
effective length of database: 11,797,585
effective search space: 3751632030
effective search space used: 3751632030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)