Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001489-TA|BGIBMGA001489-PA|undefined
         (490 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    31   0.029
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   1.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   1.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   1.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   3.3  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 30.7 bits (66), Expect = 0.029
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 334 RDDKLAKIHEEIEPFNESTTSHEDFGTNEARIERKRLRKPHITMERTFTKDKITDPIEK 392
           +D +  K+H E E F E  TSH+ +  +  R ++    +      R  +K++  D  E+
Sbjct: 248 KDRQYEKLHNEKEKFLEERTSHKRYSRSREREQKSYKNEREYRKYRETSKERFRDRRER 306


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 85  FNREINCFTIVNRHFDYSDTSSEYEDRDIELFAASGDINRETVNWNQDHYQKTMNAFNTK 144
           F+   N +  VN ++   + ++E +D++   F    ++ ++  +  +  Y K  N  NT+
Sbjct: 430 FSSSSNTWLRVNENYKTVNLAAEKKDKN-SFF----NMFKKFASLKKSPYFKEAN-LNTR 483

Query: 145 DHEKTIWIYSYKNKNLLSDYEPINYSNETXXXXXRDFN 182
                ++ +S + ++  S Y  +N+SNE      + FN
Sbjct: 484 MLNDNVFAFSRETEDNGSLYAILNFSNEEQIVDLKAFN 521


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 31/163 (19%), Positives = 65/163 (39%), Gaps = 6/163 (3%)

Query: 27  NVRKKHDVKGNLNVTKTLNDRPECS-FTKEFGIN-DYNKQNRNKCDERTKNISPLKERVA 84
           N  KK+    N   ++T + +   S +++E   + D N++ + K D R + +   KE++ 
Sbjct: 205 NESKKYATSSNSLRSRTHDFQHTSSRYSRERSCSRDRNREYKEK-DRRYEKLHNEKEKLL 263

Query: 85  FNREINCFTIVNRHFDYSDTSSEYEDRDIELFAASGDINRETVNWNQDHYQKTMNAFNTK 144
             R        +R  +     +E   R       S + +R+     +    K +++ + K
Sbjct: 264 EERTSRKRYSCSREREQKSYKNENSYRKYR--ETSKERSRDRTERERSREPKIISSLSNK 321

Query: 145 D-HEKTIWIYSYKNKNLLSDYEPINYSNETXXXXXRDFNVNDL 186
             H    + Y+Y N N  ++    NY+N          N+  +
Sbjct: 322 TIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQI 364


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 85  FNREINCFTIVNRHFDYSDTSSEYEDRDIELFAASGDINRETVNWNQDHYQKTMNAFNTK 144
           F+   N +  VN ++   + ++E +D++   F    ++ ++  +  +  Y K  N  NT+
Sbjct: 430 FSSSSNTWLRVNENYKTVNLAAEKKDKN-SFF----NMFKKFASLKKSPYFKEAN-LNTR 483

Query: 145 DHEKTIWIYSYKNKNLLSDYEPINYSNETXXXXXRDFN 182
                ++ +S + ++  S Y  +N+SNE      + FN
Sbjct: 484 MLNDNVFAFSRETEDNGSLYAILNFSNEEQIVDLKAFN 521


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 153 YSYKNKNLLSDYEPINYSNETXXXXXRDFNVN 184
           Y Y N N  ++Y   NY+N       +++ +N
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKLYYKNYIIN 353


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.129    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,260
Number of Sequences: 429
Number of extensions: 7120
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 490
length of database: 140,377
effective HSP length: 60
effective length of query: 430
effective length of database: 114,637
effective search space: 49293910
effective search space used: 49293910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)