SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001489-TA|BGIBMGA001489-PA|undefined
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb...    32   0.21 
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    29   1.1  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    29   1.1  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    29   1.5  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    29   1.9  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    28   3.4  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    28   3.4  
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr...    27   4.5  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    27   4.5  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    27   4.5  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   5.9  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    27   7.8  

>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 1/132 (0%)

Query: 228 VRPEMLNVCNSLQKQFNSWFPDQDTGDSDDSNEKSRKLITQMGLSPRFNKRSRRRCAEFV 287
           +   +LN      KQ        + G+++  N K+   +  +  S   N+ S  R A  +
Sbjct: 145 INTHLLNFVEKKLKQERLAQNYSENGETNALNTKNESTVQNIKNSLHPNEHSFIRDAAAL 204

Query: 288 GDI-ELRSHPKKQDKQTSTTANPSLEVQKRLDEKLHFKSIFTSSTASRDDKLAKIHEEIE 346
           G I E+       D           + + R+ EKL  K++ TS  A+RD+ + K+ + I 
Sbjct: 205 GAIREVDLGIISTDVDNLKNGRKRQKKRARMKEKLDSKALRTSEDAARDEFIEKMLKPIS 264

Query: 347 PFNESTTSHEDF 358
              ES   +  F
Sbjct: 265 QDEESKGIYRRF 276


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 46  DRPECSFTKEF---GINDYNKQNRNKCDERTKNISPLKERVAFNREINCFTIVNRHFDYS 102
           D  E  F  E     + D    +    DE        +E+  F+ E N   I +   ++ 
Sbjct: 740 DEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMASEEKPMFSDEENLSEIAHSEDEFD 799

Query: 103 DTSSEYED-RDIELFAASGDINR-ETVNWNQDHYQKTMNAFNTKD 145
           DT   +ED  D+  F  + D    +TV+ ++ H  K       KD
Sbjct: 800 DTVDFFEDENDLLPFNETDDEEEIQTVDHSETHSHKKKKRKAIKD 844


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 1   MEIIELDSSCSTLTPKSPDPQTSWNYNVRKKHDVKGNLNVTKTLNDRPECSFTKEFGIND 60
           ++II ++S C+ L+ +           +RK+  +   + + +TL D+ EC  T   GI  
Sbjct: 50  IKIINIESKCNELSSEIS--------LLRKRLGIIEEIEIPRTLIDQYECLVTYHNGIRA 101

Query: 61  YNKQNRNKCDERTKNISPLKERVAFNREINCFTIVNRHF-DYSDTSSE 107
                +N+     K I  L   V     ++    VN  F D SD   E
Sbjct: 102 IYNTKKNEAKNMYKEIERLS--VILGESVDEVNFVNGDFEDISDIKLE 147


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 72  RTKNISPLKERV--AFNREINCFTIVNRHFDYSDTSSEYEDRDIELFAASGDINRETVNW 129
           +T+NI  L+  +    + E++ F  V   F   D + E    D+  +     I+ E   W
Sbjct: 233 KTENIKSLEGELMGTISAELHLFDAVEEVFILQDPNVEASVFDLGDWNYWFTISTEEKTW 292

Query: 130 NQDHYQKTMNAFNTKDHEKTIWIYSYKNKNLLS 162
                   MN   + +H   IW Y   N N  S
Sbjct: 293 LSQSVDADMNPVFSFEHLSFIWNYFDANSNAFS 325


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/74 (20%), Positives = 30/74 (40%)

Query: 15  PKSPDPQTSWNYNVRKKHDVKGNLNVTKTLNDRPECSFTKEFGINDYNKQNRNKCDERTK 74
           P+ PD Q  ++ +   +  V+   N T T  D     F+    I+D N   ++  +   +
Sbjct: 90  PEIPDMQDEYSRDSHSQQSVEEQNNTTNTDEDASVNEFSVAADISDVNTLGKDNSESTEE 149

Query: 75  NISPLKERVAFNRE 88
            ++ + E      E
Sbjct: 150 PVNEVNETATLGNE 163


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 86  NREINCFTIVNRHFDYSDTSSEYEDRDIELFAASGDINRETVN 128
           NR    F  V  HF   + S E ED D + FA   D+N   ++
Sbjct: 208 NRNFIEFLSVYGHFAGEELSEEDEDEDTDDFAMPRDVNPSLIH 250


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 249 DQDTGDSDDSNEKSRKLITQMGLSPRFNKRSRRRCAEFVGDIELRSHPKKQDKQTSTTAN 308
           ++   + ++  E+  +   +     R NKR  R   EF+   EL S  +K+ K      N
Sbjct: 306 EESASEEEEEEEEEEEEENEADDETRENKRQNRLVREFIS--ELESSIQKRRKDADEATN 363

Query: 309 PSL 311
           P L
Sbjct: 364 PIL 366


>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 112

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 320 KLHFKSIFTSSTASRDDKLAKIHEEIEPFNESTTSHEDFGTN 361
           K+  KS   S     D ++A + E+IE   +  T HE   +N
Sbjct: 58  KMFMKSDLASVRTHLDAEMASLREDIEALQKKQTYHETTASN 99


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 202 IPTTYVPRLNLTLGQTLSTLTEVTEPVRPEML-NVCNSLQKQ--FNSWFPDQDTGDSDDS 258
           +P++ +   +  LGQT S  + + E   P++     +  ++   F   F D    D D+ 
Sbjct: 1   MPSSQISHQDPELGQTSSGSSSIKEKAEPQLYAGPIDPARRPDVFQEGFEDVSVTDDDND 60

Query: 259 NEKSRKL 265
           NE  RK+
Sbjct: 61  NELLRKM 67


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 249 DQDTGDSDDSNEKSRKLITQMGLSPRFNK---RSRRRCAEFVGDIELRSHPKKQDKQTST 305
           DQD   S DS+++S     +  +    NK   RS+R       + ELR   +K++++   
Sbjct: 243 DQDVNHSIDSDDQSEHEQAETPIPSSKNKRKTRSQRNKIRQRREEELRLLEQKKNEELLR 302

Query: 306 TANPSLEVQKRLDEK 320
           T + +  + K+L +K
Sbjct: 303 TIDKAPAISKKLQQK 317


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 10/122 (8%)

Query: 237  NSLQKQFNSWFPDQDTGDSDDSNEKSRKLITQMGLSPRFNKRSRRRCAEFVGDIELRS-- 294
            N    ++N ++   DT  SD   + S      + +S   N R+ R  +  +   +LRS  
Sbjct: 1697 NDQDIEYNEFYSQLDTSTSDIFQDTSVDGFPDLQVSSDINVRNDRLSSFVMSSEDLRSSD 1756

Query: 295  -HPKKQDKQTSTTA-----NPSLEVQKRLDE-KLHFKSIFTSSTASRDDKLAKIHEEIEP 347
             HP+  D    T +     +P  +V + L+E +L   S+  S   +++  L K   +   
Sbjct: 1757 GHPENSDSVLETISSVHHRSPINQVVRNLNESQLSLDSVI-SMNLNKEFALTKTENDFTD 1815

Query: 348  FN 349
             N
Sbjct: 1816 DN 1817


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 295 HPKKQDK---QTSTTANPSLEVQKRLDEKLHFKSIFTSSTASRDDKLAKIHEEIEPFNES 351
           HP  + K   QTS +   S    + L+ K   K +F+S T  R  +  K    +   + S
Sbjct: 81  HPNSRQKHQHQTSKSVPRSQRFSRELNVKKENKKVFSSQTTKRQSR--KQSTALTTNDTS 138

Query: 352 TTSHEDFGTNEARIERKRLRKPHITMERTFTKDKITD 388
               +   TN  ++ + R      + +R    + I +
Sbjct: 139 IILDDSLHTNSKKLGKTRNEVKEESQKRELVSNSIKE 175


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.129    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,262
Number of Sequences: 5004
Number of extensions: 102281
Number of successful extensions: 280
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 14
length of query: 490
length of database: 2,362,478
effective HSP length: 76
effective length of query: 414
effective length of database: 1,982,174
effective search space: 820620036
effective search space used: 820620036
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)

- SilkBase 1999-2023 -