Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001489-TA|BGIBMGA001489-PA|undefined
(490 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 32 0.21
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 29 1.1
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 29 1.1
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 29 1.5
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 29 1.9
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 28 3.4
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 28 3.4
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr... 27 4.5
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 27 4.5
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 27 4.5
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 27 5.9
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 27 7.8
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 31.9 bits (69), Expect = 0.21
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 1/132 (0%)
Query: 228 VRPEMLNVCNSLQKQFNSWFPDQDTGDSDDSNEKSRKLITQMGLSPRFNKRSRRRCAEFV 287
+ +LN KQ + G+++ N K+ + + S N+ S R A +
Sbjct: 145 INTHLLNFVEKKLKQERLAQNYSENGETNALNTKNESTVQNIKNSLHPNEHSFIRDAAAL 204
Query: 288 GDI-ELRSHPKKQDKQTSTTANPSLEVQKRLDEKLHFKSIFTSSTASRDDKLAKIHEEIE 346
G I E+ D + + R+ EKL K++ TS A+RD+ + K+ + I
Sbjct: 205 GAIREVDLGIISTDVDNLKNGRKRQKKRARMKEKLDSKALRTSEDAARDEFIEKMLKPIS 264
Query: 347 PFNESTTSHEDF 358
ES + F
Sbjct: 265 QDEESKGIYRRF 276
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 29.5 bits (63), Expect = 1.1
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 46 DRPECSFTKEF---GINDYNKQNRNKCDERTKNISPLKERVAFNREINCFTIVNRHFDYS 102
D E F E + D + DE +E+ F+ E N I + ++
Sbjct: 740 DEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMASEEKPMFSDEENLSEIAHSEDEFD 799
Query: 103 DTSSEYED-RDIELFAASGDINR-ETVNWNQDHYQKTMNAFNTKD 145
DT +ED D+ F + D +TV+ ++ H K KD
Sbjct: 800 DTVDFFEDENDLLPFNETDDEEEIQTVDHSETHSHKKKKRKAIKD 844
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 29.5 bits (63), Expect = 1.1
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 1 MEIIELDSSCSTLTPKSPDPQTSWNYNVRKKHDVKGNLNVTKTLNDRPECSFTKEFGIND 60
++II ++S C+ L+ + +RK+ + + + +TL D+ EC T GI
Sbjct: 50 IKIINIESKCNELSSEIS--------LLRKRLGIIEEIEIPRTLIDQYECLVTYHNGIRA 101
Query: 61 YNKQNRNKCDERTKNISPLKERVAFNREINCFTIVNRHF-DYSDTSSE 107
+N+ K I L V ++ VN F D SD E
Sbjct: 102 IYNTKKNEAKNMYKEIERLS--VILGESVDEVNFVNGDFEDISDIKLE 147
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 29.1 bits (62), Expect = 1.5
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 72 RTKNISPLKERV--AFNREINCFTIVNRHFDYSDTSSEYEDRDIELFAASGDINRETVNW 129
+T+NI L+ + + E++ F V F D + E D+ + I+ E W
Sbjct: 233 KTENIKSLEGELMGTISAELHLFDAVEEVFILQDPNVEASVFDLGDWNYWFTISTEEKTW 292
Query: 130 NQDHYQKTMNAFNTKDHEKTIWIYSYKNKNLLS 162
MN + +H IW Y N N S
Sbjct: 293 LSQSVDADMNPVFSFEHLSFIWNYFDANSNAFS 325
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/74 (20%), Positives = 30/74 (40%)
Query: 15 PKSPDPQTSWNYNVRKKHDVKGNLNVTKTLNDRPECSFTKEFGINDYNKQNRNKCDERTK 74
P+ PD Q ++ + + V+ N T T D F+ I+D N ++ + +
Sbjct: 90 PEIPDMQDEYSRDSHSQQSVEEQNNTTNTDEDASVNEFSVAADISDVNTLGKDNSESTEE 149
Query: 75 NISPLKERVAFNRE 88
++ + E E
Sbjct: 150 PVNEVNETATLGNE 163
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 86 NREINCFTIVNRHFDYSDTSSEYEDRDIELFAASGDINRETVN 128
NR F V HF + S E ED D + FA D+N ++
Sbjct: 208 NRNFIEFLSVYGHFAGEELSEEDEDEDTDDFAMPRDVNPSLIH 250
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 249 DQDTGDSDDSNEKSRKLITQMGLSPRFNKRSRRRCAEFVGDIELRSHPKKQDKQTSTTAN 308
++ + ++ E+ + + R NKR R EF+ EL S +K+ K N
Sbjct: 306 EESASEEEEEEEEEEEEENEADDETRENKRQNRLVREFIS--ELESSIQKRRKDADEATN 363
Query: 309 PSL 311
P L
Sbjct: 364 PIL 366
>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 112
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 320 KLHFKSIFTSSTASRDDKLAKIHEEIEPFNESTTSHEDFGTN 361
K+ KS S D ++A + E+IE + T HE +N
Sbjct: 58 KMFMKSDLASVRTHLDAEMASLREDIEALQKKQTYHETTASN 99
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 27.5 bits (58), Expect = 4.5
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 202 IPTTYVPRLNLTLGQTLSTLTEVTEPVRPEML-NVCNSLQKQ--FNSWFPDQDTGDSDDS 258
+P++ + + LGQT S + + E P++ + ++ F F D D D+
Sbjct: 1 MPSSQISHQDPELGQTSSGSSSIKEKAEPQLYAGPIDPARRPDVFQEGFEDVSVTDDDND 60
Query: 259 NEKSRKL 265
NE RK+
Sbjct: 61 NELLRKM 67
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 27.5 bits (58), Expect = 4.5
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 249 DQDTGDSDDSNEKSRKLITQMGLSPRFNK---RSRRRCAEFVGDIELRSHPKKQDKQTST 305
DQD S DS+++S + + NK RS+R + ELR +K++++
Sbjct: 243 DQDVNHSIDSDDQSEHEQAETPIPSSKNKRKTRSQRNKIRQRREEELRLLEQKKNEELLR 302
Query: 306 TANPSLEVQKRLDEK 320
T + + + K+L +K
Sbjct: 303 TIDKAPAISKKLQQK 317
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 27.1 bits (57), Expect = 5.9
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Query: 237 NSLQKQFNSWFPDQDTGDSDDSNEKSRKLITQMGLSPRFNKRSRRRCAEFVGDIELRS-- 294
N ++N ++ DT SD + S + +S N R+ R + + +LRS
Sbjct: 1697 NDQDIEYNEFYSQLDTSTSDIFQDTSVDGFPDLQVSSDINVRNDRLSSFVMSSEDLRSSD 1756
Query: 295 -HPKKQDKQTSTTA-----NPSLEVQKRLDE-KLHFKSIFTSSTASRDDKLAKIHEEIEP 347
HP+ D T + +P +V + L+E +L S+ S +++ L K +
Sbjct: 1757 GHPENSDSVLETISSVHHRSPINQVVRNLNESQLSLDSVI-SMNLNKEFALTKTENDFTD 1815
Query: 348 FN 349
N
Sbjct: 1816 DN 1817
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 7.8
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 295 HPKKQDK---QTSTTANPSLEVQKRLDEKLHFKSIFTSSTASRDDKLAKIHEEIEPFNES 351
HP + K QTS + S + L+ K K +F+S T R + K + + S
Sbjct: 81 HPNSRQKHQHQTSKSVPRSQRFSRELNVKKENKKVFSSQTTKRQSR--KQSTALTTNDTS 138
Query: 352 TTSHEDFGTNEARIERKRLRKPHITMERTFTKDKITD 388
+ TN ++ + R + +R + I +
Sbjct: 139 IILDDSLHTNSKKLGKTRNEVKEESQKRELVSNSIKE 175
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.129 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,262
Number of Sequences: 5004
Number of extensions: 102281
Number of successful extensions: 280
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 14
length of query: 490
length of database: 2,362,478
effective HSP length: 76
effective length of query: 414
effective length of database: 1,982,174
effective search space: 820620036
effective search space used: 820620036
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)
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