GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001489-TA|BGIBMGA001489-PA|undefined
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0335 - 17669232-17670063,17670619-17672150                       33   0.68 
02_01_0750 + 5574707-5576017                                           32   1.2  
01_01_0171 + 1446221-1446902,1447040-1447221,1447339-1447409,144...    32   1.2  
05_02_0065 - 6276439-6276462,6276716-6276781,6277035-6277100,627...    30   3.6  
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207...    30   3.6  
07_03_0032 - 12651989-12652636,12652726-12652956,12653515-126536...    29   6.3  
01_03_0114 - 12649104-12649141,12650137-12650245,12650500-126506...    29   8.4  

>12_02_0335 - 17669232-17670063,17670619-17672150
          Length = 787

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 250 QDTGDSDDSNEKSRKLITQMGLSP-RFNKRSRRRCAEFVGDIELRSHPKKQDKQTSTTAN 308
           Q  G+S   +++   LI ++ ++P +F+K S R  +EF  D +  +          + ++
Sbjct: 149 QSNGESHLHDDEKMNLI-EISITPEKFSKNSSRATSEFSEDCDFETADGSAVTSLHSASS 207

Query: 309 PSLEVQK-RLDEKLHFKSIFTSSTASRDDKLAK 340
            S E+QK R+ + +    I + S+   ++KL K
Sbjct: 208 TSAEIQKIRIQDVISGDPIDSESSMVENEKLNK 240


>02_01_0750 + 5574707-5576017
          Length = 436

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 85  FNREINCFTIVNRHFDYSDTSSEYEDRDIELFAASGDIN 123
           F R+I  F + +  F Y D      DRD+EL    G ++
Sbjct: 224 FTRKILSFNLTDEKFSYLDVPDSVRDRDLELVEGEGKLH 262


>01_01_0171 +
           1446221-1446902,1447040-1447221,1447339-1447409,
           1447480-1447486,1447530-1447619,1447694-1447981,
           1448121-1448333,1448860-1449087
          Length = 586

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 287 VGDIELRSHPKKQDKQTSTTANPSLEVQKRLDEKLHFKSIFTSSTASRDDKLAKIHEEIE 346
           V D+E     +K DK  +  A+  +EV+KR  E+L  +S +  +TAS +  + +  ++++
Sbjct: 168 VADLE-NEGTRKTDKLVANLAS-QVEVKKRHVEEL--ESQYNETTASLERVMEQREQQLQ 223

Query: 347 PFNESTTSHEDFGTNEA-RI--ERKRLR 371
            +NE     +D     + RI  E K+LR
Sbjct: 224 AYNEEIRKMQDLALRHSQRIMDENKKLR 251


>05_02_0065 -
           6276439-6276462,6276716-6276781,6277035-6277100,
           6277384-6277449,6277698-6277745,6278233-6278292,
           6278418-6278483,6278569-6278652,6278736-6278801,
           6278878-6279036,6279106-6279222,6279305-6279397,
           6279697-6279900,6280013-6280161,6280234-6280492
          Length = 508

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 58  INDYNKQNRNKCD--ERTKNISPLKERVAFNREINCFTIVNRHFDYSDTSSEYEDRDIEL 115
           + D NKQN  + D  ++ K IS  K + +       F   N      DT+   +++ ++L
Sbjct: 396 VEDKNKQNWEQHDYGKQRKVISAQKRQCSTTN----FIADN---SMEDTNIHVQNKVLQL 448

Query: 116 FAASGDINRETVNWNQ-DHYQKTMNAFNTKDHEKTIWIYSYKNKN 159
                 I +   N NQ DH Q+  N  N       +++ S+KN+N
Sbjct: 449 PTKQSTIYKNKGNMNQNDHMQQGKNNSNAYKIGTNVFLKSWKNRN 493


>02_01_0311 -
           2075881-2076165,2076450-2076519,2076628-2076691,
           2076798-2076837,2076930-2077006,2077095-2077311,
           2077482-2078132
          Length = 467

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 295 HPKKQDKQTSTTANPSLEVQKRLDEKLHFKSIFTSSTASRDDKLAKIHEEIEPFNESTTS 354
           H KK+  Q +      +EVQK+L E+L  +             L KI EE +   ES +S
Sbjct: 346 HAKKKSAQMAEALRMQMEVQKQLHEQLEVQRQLQLRIEEHARYLQKILEEQQKARESISS 405


>07_03_0032 -
           12651989-12652636,12652726-12652956,12653515-12653634,
           12653768-12653891,12654023-12654366
          Length = 488

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 313 VQKRLDEKLHFKSIFT--SSTASRDDKLAKIHEEIEPFNESTTSHEDFGTNEARIER 367
           + K L E+ H +S ++  SS +S  D+L ++H  +E   +S +  ++FG + ++ ++
Sbjct: 295 ILKTLREREHDESEYSAISSQSSSSDELDEMHHHVEQGGDSGSDTDNFGDDGSQSQK 351


>01_03_0114 -
           12649104-12649141,12650137-12650245,12650500-12650691,
           12650797-12650904,12650986-12651162,12652331-12652459,
           12653314-12653589,12653667-12653916,12654909-12655561
          Length = 643

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 133 HYQKTMNAFNTKDHEKTIWIYSYKNKNLLSDYEPINYSNE 172
           H ++T+  F  +D    IWI  YKN       + +NY N+
Sbjct: 525 HQERTLQLFKLEDVAMGIWIQQYKNSG-----QKVNYVND 559


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.129    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,429,077
Number of Sequences: 37544
Number of extensions: 534999
Number of successful extensions: 1028
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 7
length of query: 490
length of database: 14,793,348
effective HSP length: 85
effective length of query: 405
effective length of database: 11,602,108
effective search space: 4698853740
effective search space used: 4698853740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 62 (29.1 bits)