BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001489-TA|BGIBMGA001489-PA|undefined (490 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical pr... 34 0.20 AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal ... 34 0.20 AF000266-5|AAC71172.1| 370|Caenorhabditis elegans Hypothetical ... 34 0.20 AF000266-4|ABB51177.1| 403|Caenorhabditis elegans Hypothetical ... 34 0.20 AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 34 0.26 U42847-3|AAA83605.2| 210|Caenorhabditis elegans Hypothetical pr... 33 0.35 U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 33 0.60 AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 31 1.4 U41278-4|AAK31513.3| 928|Caenorhabditis elegans Hypothetical pr... 31 1.8 Z81136-2|CAB03459.1| 743|Caenorhabditis elegans Hypothetical pr... 31 2.4 Z81122-6|CAB03358.1| 663|Caenorhabditis elegans Hypothetical pr... 31 2.4 Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical p... 30 3.2 AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein. 30 3.2 U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 30 4.2 AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical ... 30 4.2 Z66565-3|CAA91479.1| 177|Caenorhabditis elegans Hypothetical pr... 29 7.4 U97013-6|AAB52337.1| 221|Caenorhabditis elegans Hypothetical pr... 29 9.8 AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 29 9.8 AF040653-6|AAB95027.2| 334|Caenorhabditis elegans Hypothetical ... 29 9.8 AF039047-14|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (m... 29 9.8 AF039047-13|AAM15589.1| 978|Caenorhabditis elegans Human mlk (m... 29 9.8 AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 29 9.8 >Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical protein F26D2.2 protein. Length = 489 Score = 34.3 bits (75), Expect = 0.20 Identities = 23/66 (34%), Positives = 33/66 (50%) Query: 38 LNVTKTLNDRPECSFTKEFGINDYNKQNRNKCDERTKNISPLKERVAFNREINCFTIVNR 97 L +KT +D E + INDY+KQ ++ E K + +KE+ A N + TI Sbjct: 356 LQSSKTESDLEEEISAMQLEINDYDKQIKDAAKEHEKLFNQIKEQRAANGDQFNDTIDIV 415 Query: 98 HFDYSD 103 DYSD Sbjct: 416 ESDYSD 421 >AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal complex protein SYP-1 protein. Length = 489 Score = 34.3 bits (75), Expect = 0.20 Identities = 23/66 (34%), Positives = 33/66 (50%) Query: 38 LNVTKTLNDRPECSFTKEFGINDYNKQNRNKCDERTKNISPLKERVAFNREINCFTIVNR 97 L +KT +D E + INDY+KQ ++ E K + +KE+ A N + TI Sbjct: 356 LQSSKTESDLEEEISAMQLEINDYDKQIKDAAKEHEKLFNQIKEQRAANGDQFNDTIDIV 415 Query: 98 HFDYSD 103 DYSD Sbjct: 416 ESDYSD 421 >AF000266-5|AAC71172.1| 370|Caenorhabditis elegans Hypothetical protein W08F4.8a protein. Length = 370 Score = 34.3 bits (75), Expect = 0.20 Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 11/157 (7%) Query: 243 FNSWFPDQDTGDSDDSNEK-SRKLITQMGLSPRFNKRSRRRCAEFVGDIELRSHPKKQD- 300 ++ W + + D DD++ + + R + + ++ + D E + KK + Sbjct: 5 YSKWKDIEVSDDEDDTHPNIDTPSLFRWRHQARLERMAEKKMEQEKIDKEKGTTSKKMEE 64 Query: 301 ---KQTSTTANPSLEVQKRLDEKLHFKSIFTSSTASRDDKLAKIHEEIEPFNESTTSHED 357 K + ++QK++DE + + A ++K E +EP+N T HE Sbjct: 65 LEKKLAAADVTDKSDIQKQIDEVKAQEEAWRKKEAELEEK-----ERLEPWNVDTIGHEA 119 Query: 358 FGTNEA-RIERKRLRKPHITMERTFTKDKITDPIEKL 393 F T+ +I K+ + P E T + E L Sbjct: 120 FSTSRINKITEKKPQAPKTDEEDTHAMSTFFETHESL 156 >AF000266-4|ABB51177.1| 403|Caenorhabditis elegans Hypothetical protein W08F4.8b protein. Length = 403 Score = 34.3 bits (75), Expect = 0.20 Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 11/157 (7%) Query: 243 FNSWFPDQDTGDSDDSNEK-SRKLITQMGLSPRFNKRSRRRCAEFVGDIELRSHPKKQD- 300 ++ W + + D DD++ + + R + + ++ + D E + KK + Sbjct: 38 YSKWKDIEVSDDEDDTHPNIDTPSLFRWRHQARLERMAEKKMEQEKIDKEKGTTSKKMEE 97 Query: 301 ---KQTSTTANPSLEVQKRLDEKLHFKSIFTSSTASRDDKLAKIHEEIEPFNESTTSHED 357 K + ++QK++DE + + A ++K E +EP+N T HE Sbjct: 98 LEKKLAAADVTDKSDIQKQIDEVKAQEEAWRKKEAELEEK-----ERLEPWNVDTIGHEA 152 Query: 358 FGTNEA-RIERKRLRKPHITMERTFTKDKITDPIEKL 393 F T+ +I K+ + P E T + E L Sbjct: 153 FSTSRINKITEKKPQAPKTDEEDTHAMSTFFETHESL 189 >AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin protein. Length = 1346 Score = 33.9 bits (74), Expect = 0.26 Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 13/149 (8%) Query: 225 TEPVRPEMLNVCNSLQKQFNSWFPDQDTGDSDDSNEK-SRKLITQMGLSPRFNKRSRRRC 283 + P+ P + CN+L+++ + F + D + + EK +R L + + + + +RR+ Sbjct: 400 SSPLIPPTPSACNTLERRSRA-FEHEMPEDRETALEKLNRSLHNRREMEKQKAEEARRKE 458 Query: 284 AEFVGDI--------ELRSHPKKQDKQTSTTANPSLEVQKRLDEKLHFKSIFTSSTAS-- 333 AE + +I E R ++++++ + + +KR + ++ F S T S Sbjct: 459 AERIEEIERMRQQAEERRRREREEEERRKREEEEAEKQRKREEREVRFSKNDISPTTSSG 518 Query: 334 -RDDKLAKIHEEIEPFNESTTSHEDFGTN 361 DDK A + + HE F N Sbjct: 519 VADDKKATMRRRHDEARRRQLEHEQFTAN 547 >U42847-3|AAA83605.2| 210|Caenorhabditis elegans Hypothetical protein F39H12.3 protein. Length = 210 Score = 33.5 bits (73), Expect = 0.35 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Query: 284 AEFVGDIELRSHPKKQDKQTSTTANPSLE-VQKRLDEKLHFKSIFTSSTASRDDKLA-KI 341 A F G + +R+HP+K T T+++ L+ + D+K H +T + +D+ A KI Sbjct: 90 AAFKGHL-VRAHPEKYGMSTRTSSSEKLDSANNKKDQKRHSVGGYTIDVDTPEDRAATKI 148 Query: 342 HEEIEPFNESTTSHED 357 EI F T H D Sbjct: 149 QSEIRGF--LTRKHVD 162 >U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily assigned gene nameprotein 278 protein. Length = 1130 Score = 32.7 bits (71), Expect = 0.60 Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 10/146 (6%) Query: 259 NEKSRKLITQMGLSPRFNKRSRRRCAEFVGDIELRSHPKKQDKQTSTTANPSLEVQKRLD 318 +EK +++T+ + R E G +Q + +T +Q+++D Sbjct: 819 SEKDNEVLTKAERINELETCLKEREVELTGMRTKLDDMTQQLNEETTVVLFDNSIQEKID 878 Query: 319 EKLHFKSIFTSSTASRDDKLAKIHEEI-------EPFNESTTS-HEDFGTNEARIERKRL 370 EK + SR++++AK+HEE+ E NE + ++ + ++E ++ Sbjct: 879 EKEATINEMNERLKSRENEIAKLHEEMYMQKTQNEKRNEEQSKLFQELMFEKEQLEAEKA 938 Query: 371 RKPHI--TMERTFTKDKITDPIEKLE 394 + HI +E+ F DK + E++E Sbjct: 939 EQSHIEAEVEQVFQADKESKWKEQIE 964 >AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical protein Y44E3A.4 protein. Length = 511 Score = 31.5 bits (68), Expect = 1.4 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Query: 281 RRCAEFVG-DIELRSHPKKQDKQTSTTANPSLEVQKRLDEKLHFKSIFTSSTAS 333 R A+ +G ++ +RS PK D+ ST + V K L+ K F S F SS AS Sbjct: 130 RTPAKSIGSEVVMRSEPKAIDRTPSTIISDPAPVLKALETK--FSSTFASSAAS 181 >U41278-4|AAK31513.3| 928|Caenorhabditis elegans Hypothetical protein F33G12.5 protein. Length = 928 Score = 31.1 bits (67), Expect = 1.8 Identities = 16/81 (19%), Positives = 41/81 (50%) Query: 291 ELRSHPKKQDKQTSTTANPSLEVQKRLDEKLHFKSIFTSSTASRDDKLAKIHEEIEPFNE 350 E + + +++Q+S + L +K L+++ + + D+L I++++E N+ Sbjct: 682 ETKVPEEAENQQSSRELHEDLWARKELEKRFARAMLQNAELVETIDRLEHINQQLELEND 741 Query: 351 STTSHEDFGTNEARIERKRLR 371 + H ++ ++ R+RLR Sbjct: 742 TIADHVVLYQHQRKLVRERLR 762 >Z81136-2|CAB03459.1| 743|Caenorhabditis elegans Hypothetical protein W02B8.3 protein. Length = 743 Score = 30.7 bits (66), Expect = 2.4 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 4/90 (4%) Query: 268 QMGLSPRFNKRSRRRCAEFVGDIELRSHPK-KQDKQTSTTANPSLEVQKRLDEKLHFKSI 326 ++ L +++K+ +C+ DI SH K D ++ N L+ +K D+K Sbjct: 83 RLNLVEKYDKKKHEKCSSKAHDIT--SHAKCLVDLESDGLKNRLLKRKKYFDQKTRSSIE 140 Query: 327 FTSSTASRDDKLAKIHEEIEPFNESTTSHE 356 S T + DKL K+ +E + S ++ + Sbjct: 141 KKSRTTKKSDKLKKL-RSMESYEASKSAEK 169 >Z81122-6|CAB03358.1| 663|Caenorhabditis elegans Hypothetical protein T13F2.7 protein. Length = 663 Score = 30.7 bits (66), Expect = 2.4 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%) Query: 308 NPSLEVQKRLDEKLHFKSIFTSSTASRDDKLAKIHEEIEPFNESTTSHEDF-GTNEARIE 366 +P+L KR+ ++ S AS+ K + + S++S EDF G +AR Sbjct: 526 SPTLAAVKRILDEGEIDSDEEKQQASKSKKKKPATSDSSD-STSSSSEEDFDGPVDARKR 584 Query: 367 RKRLRKPHITMERTFTKDKITDP 389 RK RK RT T + DP Sbjct: 585 RKLRRKKDRKNPRTTTASSLLDP 607 >Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical protein T09A5.10 protein. Length = 821 Score = 30.3 bits (65), Expect = 3.2 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 287 VGDIELRSHPKKQDKQTSTTA-NPSLEVQKRLDEKLHFKSIFTSSTA-SRDDKLAKIHEE 344 V ++ + S KQD S T + L + +KL + + S A SR D L H E Sbjct: 398 VEELSVASLRNKQDADNSKTMLSEELARFEETVDKLRQEKLEALSMANSRIDALRLEHSE 457 Query: 345 IEPFNESTTSHEDFGTNEARIERKRL 370 E +ST + +E R E+KRL Sbjct: 458 REKMMKSTNARLQADLDEERNEKKRL 483 >AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein. Length = 821 Score = 30.3 bits (65), Expect = 3.2 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 287 VGDIELRSHPKKQDKQTSTTA-NPSLEVQKRLDEKLHFKSIFTSSTA-SRDDKLAKIHEE 344 V ++ + S KQD S T + L + +KL + + S A SR D L H E Sbjct: 398 VEELSVASLRNKQDADNSKTMLSEELARFEETVDKLRQEKLEALSMANSRIDALRLEHSE 457 Query: 345 IEPFNESTTSHEDFGTNEARIERKRL 370 E +ST + +E R E+KRL Sbjct: 458 REKMMKSTNARLQADLDEERNEKKRL 483 >U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical protein F02E8.5 protein. Length = 578 Score = 29.9 bits (64), Expect = 4.2 Identities = 16/67 (23%), Positives = 37/67 (55%) Query: 290 IELRSHPKKQDKQTSTTANPSLEVQKRLDEKLHFKSIFTSSTASRDDKLAKIHEEIEPFN 349 IE K+++KQT+T N ++ ++L++K + + ++S+ +LA++ EE+ Sbjct: 61 IERLEDVKQRNKQTATLYNNYSKLAEQLEKKHKYGTSSSNSSQLETGELARVKEEMAELY 120 Query: 350 ESTTSHE 356 S ++ Sbjct: 121 RSKCQND 127 >AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical protein C35E7.9 protein. Length = 301 Score = 29.9 bits (64), Expect = 4.2 Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 1/152 (0%) Query: 228 VRPEMLNVCNSLQKQFNSWFPDQDTGDSDDSNEKSRKLITQMGLSPRFNKRSRRRCAEFV 287 ++P + NV + ++ +++ ++ EKS+K + K ++ + Sbjct: 45 MKPPVENVKSKKSEKKEEPKKEEEPKKEEEKKEKSKKSEKKDDKKEEAKKEDDKKDEKKD 104 Query: 288 GDIELRSHPKKQDKQTSTTANPSL-EVQKRLDEKLHFKSIFTSSTASRDDKLAKIHEEIE 346 E + KK DK+ E +K D+K K S + + K K EE + Sbjct: 105 EKKEDKKDDKKDDKKEEKKEEKKEDEKEKGDDKKEDEKDDKKSGSKDAEKKEEKKEEEKK 164 Query: 347 PFNESTTSHEDFGTNEARIERKRLRKPHITME 378 + E + E+K KPHIT++ Sbjct: 165 EEKKEEKKEEKKEDEKKEDEKKEEPKPHITID 196 >Z66565-3|CAA91479.1| 177|Caenorhabditis elegans Hypothetical protein T04F8.3 protein. Length = 177 Score = 29.1 bits (62), Expect = 7.4 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 334 RDDKLAKIH---EEIEPFNESTTSHEDFGTNEARIERKRLRKPHITMERTFTKDK 385 RD AK + EI+ F + +D +E IE +++ + H+T++ FTK++ Sbjct: 70 RDKYAAKYNIFPHEIDMFYDDKEVFDDDTCSEIGIEHEQIIRMHVTIDTLFTKNR 124 >U97013-6|AAB52337.1| 221|Caenorhabditis elegans Hypothetical protein F28H1.1 protein. Length = 221 Score = 28.7 bits (61), Expect = 9.8 Identities = 14/52 (26%), Positives = 20/52 (38%) Query: 96 NRHFDYSDTSSEYEDRDIELFAASGDINRETVNWNQDHYQKTMNAFNTKDHE 147 N H Y E D ++F+ G N E Q H Q N + + H+ Sbjct: 53 NYHHPYEVKPFEAIDEKNDVFSTMGHWNSEQKQSRQQHQQYQQNQYQARQHQ 104 >AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. Length = 1359 Score = 28.7 bits (61), Expect = 9.8 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 11/135 (8%) Query: 249 DQDTGDSDDSNEKSRKLITQMGLSPRFNKRSRRRCAEFVGDIELRSHPKKQD----KQTS 304 D+ + D KS+K + Q KR+ + D E KK+ KQTS Sbjct: 93 DESDEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEEREQKSKKKSKKTKKQTS 152 Query: 305 TTANPSLEVQKRL------DEKLHFKSIFTSSTASRDDKLAKIHEE-IEPFNESTTSHED 357 + ++ E ++++ EK K TS + D+K +K ++ ++ +S + E Sbjct: 153 SESSEESEEERKVKKSKKNKEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESESES 212 Query: 358 FGTNEARIERKRLRK 372 E + +K+ +K Sbjct: 213 EDEKEVKKSKKKSKK 227 >AF040653-6|AAB95027.2| 334|Caenorhabditis elegans Hypothetical protein K05F6.7 protein. Length = 334 Score = 28.7 bits (61), Expect = 9.8 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 10/61 (16%) Query: 101 YSDTSSEYEDRDIEL-FAASGDINRETVNWNQDHYQKTMNAFNTKDHEKTIWIYSYKNKN 159 +S S + +D EL A S + E +WN+ +N +H++ W+ SYKNK Sbjct: 32 FSMVSQKTKDFTRELCIAGSSQLFIELTDWNE---------YNISNHDELSWMCSYKNKE 82 Query: 160 L 160 + Sbjct: 83 V 83 >AF039047-14|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (mixed lineage kinase)homolog protein 1, isoform a protein. Length = 1040 Score = 28.7 bits (61), Expect = 9.8 Identities = 12/22 (54%), Positives = 16/22 (72%) Query: 104 TSSEYEDRDIELFAASGDINRE 125 T E+E R +L+A SGDINR+ Sbjct: 483 TKEEFEKRFHDLYAGSGDINRK 504 >AF039047-13|AAM15589.1| 978|Caenorhabditis elegans Human mlk (mixed lineage kinase)homolog protein 1, isoform b protein. Length = 978 Score = 28.7 bits (61), Expect = 9.8 Identities = 12/22 (54%), Positives = 16/22 (72%) Query: 104 TSSEYEDRDIELFAASGDINRE 125 T E+E R +L+A SGDINR+ Sbjct: 483 TKEEFEKRFHDLYAGSGDINRK 504 >AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene related protein 1 protein. Length = 1359 Score = 28.7 bits (61), Expect = 9.8 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 11/135 (8%) Query: 249 DQDTGDSDDSNEKSRKLITQMGLSPRFNKRSRRRCAEFVGDIELRSHPKKQD----KQTS 304 D+ + D KS+K + Q KR+ + D E KK+ KQTS Sbjct: 93 DESDEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEEREQKSKKKSKKTKKQTS 152 Query: 305 TTANPSLEVQKRL------DEKLHFKSIFTSSTASRDDKLAKIHEE-IEPFNESTTSHED 357 + ++ E ++++ EK K TS + D+K +K ++ ++ +S + E Sbjct: 153 SESSEESEEERKVKKSKKNKEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESESES 212 Query: 358 FGTNEARIERKRLRK 372 E + +K+ +K Sbjct: 213 EDEKEVKKSKKKSKK 227 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.314 0.129 0.385 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,519,426 Number of Sequences: 27539 Number of extensions: 549162 Number of successful extensions: 1358 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 1342 Number of HSP's gapped (non-prelim): 25 length of query: 490 length of database: 12,573,161 effective HSP length: 84 effective length of query: 406 effective length of database: 10,259,885 effective search space: 4165513310 effective search space used: 4165513310 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (22.0 bits) S2: 61 (28.7 bits)
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