Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001489-TA|BGIBMGA001489-PA|undefined
(490 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P... 33 0.32
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca... 32 0.75
At1g35770.1 68414.m04447 Ulp1 protease family protein contains P... 31 1.7
At5g24800.1 68418.m02928 bZIP transcription factor family protei... 30 3.0
At4g34290.1 68417.m04874 SWIB complex BAF60b domain-containing p... 30 4.0
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 29 5.3
At5g55150.1 68418.m06876 F-box family protein similar to unknown... 29 7.0
At2g34780.1 68415.m04270 expressed protein 29 7.0
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 29 7.0
At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly ... 29 7.0
At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly ... 29 7.0
At5g54480.1 68418.m06784 hypothetical protein 29 9.2
At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim... 29 9.2
>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 938
Score = 33.5 bits (73), Expect = 0.32
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 36 GNLNVTKTLNDRPECSFTKEFGINDYNKQNRNKCDERTKNISPLKERVAFNREI 89
GN+ + T +D + EFG N +R+ C ERT NI P +E + + +I
Sbjct: 333 GNVGASNT-SDLGSNATNDEFGFNSLRTYSRSHCPERTSNIEP-EEVIPMDEDI 384
>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 755
Score = 32.3 bits (70), Expect = 0.75
Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 12/177 (6%)
Query: 252 TGDSDDSNEKSRKLITQMGLSPRFNKRSRRRCAEFVGDIELRSHPKK------QDKQTST 305
TG DD + +++L + F + R ++ D H K + ++
Sbjct: 246 TGSGDDEEQSAKRLSMLEEIEREFEGLEQLRASDSTADNNEEEHAAKGQSLLEEIEREFE 305
Query: 306 TANPSLEVQKRLDEKLHFKSIFTSSTASRDDKLAKIHEEIEPFNESTTSHEDFGTNEARI 365
A SL+ Q ++D+ K FT+ A R L +I E E + DF A
Sbjct: 306 AATESLK-QLQVDDSTEDKEHFTA--AKRQSLLEEIEREFEAATKDLKQLNDFTEGSADD 362
Query: 366 ERKRLRKPHI-TMERTFTKDKITDPIEKLECXXXXXXXXXXXXSAITDFVLSNMEED 421
E+ R + +ER F + T +E+L+ SA +L +E +
Sbjct: 363 EQSAKRNKMLEDIEREF--EAATIGLEQLKANDFSEGNNNEEQSAKRKSMLEEIERE 417
>At1g35770.1 68414.m04447 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 968
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 19 DPQTSWNYNVRKKHDVKGNLNVTKTLNDRPECSFTKEFGINDYNKQNRNKCDERTKNI 76
DP + N+ K+ GN+ + T D + EFG N +R+ C ERT N+
Sbjct: 410 DPDSGVNHP--KETAPAGNVGASNT-GDLGSNATNDEFGFNSLRTNSRSHCPERTSNV 464
>At5g24800.1 68418.m02928 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H2
GI:10954096
Length = 277
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 249 DQDTGDSDDSNEKSR-KLITQMGLSPRFNKRSRRRCAEFVGDIELRSHPKKQDKQT 303
+ + G S+ +N+ + K I +M + KRSRRR E++ D+E + K D T
Sbjct: 106 ETEAGQSEMTNDPNDLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLKGDNST 161
>At4g34290.1 68417.m04874 SWIB complex BAF60b domain-containing
protein contains Pfam profile PF02201: BAF60b domain of
the SWIB complex
Length = 144
Score = 29.9 bits (64), Expect = 4.0
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 8 SSCSTLTPKSPDPQTSWNYNV--RKKHDVKGNLNVTKTLNDRPECSFTKEFGINDYNKQN 65
SS T T K+ +P+ + DV G + +T + ++ KE + D +
Sbjct: 53 SSDPTTTTKTREPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKR 112
Query: 66 RNKCDERTKNISPLKERVAF 85
CDE+ K I KERV F
Sbjct: 113 DILCDEKLKKIFEGKERVGF 132
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 29.5 bits (63), Expect = 5.3
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 294 SHPKKQDKQTSTTANPSLEVQKRLDEKLHFKSIFTSSTASRDDKLAKIHEEIEP 347
S K+D++TSTT++ S + K E H + S+ ++ K K H+E +P
Sbjct: 375 SQVSKRDRETSTTSHKSRKKNKENSE--HDSTPHESNGKTKKKKKKKTHKEEQP 426
>At5g55150.1 68418.m06876 F-box family protein similar to unknown
protein (dbj|BAA95762.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 360
Score = 29.1 bits (62), Expect = 7.0
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 40 VTKTLNDRPECSFTKEFGINDYNKQNRNKCDERTKNISPLKERVAFNREINCFTIV--NR 97
V K L +C F F I ++N++ +E TK +S + + + + C ++ R
Sbjct: 246 VLKKLELNDDCDFETSFEIYEFNRET----NEWTKVMSLRGKALFLSPQGRCIAVLAGER 301
Query: 98 HFDYSDTSSEYEDRDIELFAASGDINRETVNWNQDHYQK 136
F + D S + D D SG N W K
Sbjct: 302 GF-FKDNSVYFIDGDDPSVGGSGPQNLSVFEWESKQIMK 339
>At2g34780.1 68415.m04270 expressed protein
Length = 1297
Score = 29.1 bits (62), Expect = 7.0
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 324 KSIFTSSTASRDDKLAKIHEEIEPFNESTTSHEDF--GTNEARIERKRLRKPHITMERTF 381
K F+ ++S + +K+ E ++ F ES T H+ + +E+ R H +
Sbjct: 1075 KCPFSDRSSSLEAMASKLMEILQEFTESNTLHKSLTGSLGSSHLEKTEFRPAHKDFQCVL 1134
Query: 382 TKDK 385
T+D+
Sbjct: 1135 TRDQ 1138
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 29.1 bits (62), Expect = 7.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 112 DIELFAASGDINRETVNWNQDHYQKTMN--AFNTKDHEKTIW 151
D+ +FA SGD NRE V W+++ Q +N F+T W
Sbjct: 367 DLTMFA-SGDANREAVVWDRETKQVKLNNMLFHTARINSLAW 407
>At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly
identical to acetyl-CoA carboxylase 2 (ACC2)
[Arabidopsis thaliana] GI:11869928
Length = 1755
Score = 29.1 bits (62), Expect = 7.0
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 324 KSIFTSSTASRDDK-LAKIHEEIEPFNESTTSHEDFGTNEARIERKRLRKPHITMERTFT 382
K I + +S D+K + IEP S+E + AR+ L + ++++E F
Sbjct: 363 KGILEAHLSSCDEKERGSLERLIEPLMSLVKSYEGGRESHARLIVHSLFEEYLSVEELFN 422
Query: 383 KDKITDPIEKL 393
+ + D IE++
Sbjct: 423 DNMLADVIERM 433
>At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly
identical to acetyl-CoA carboxylase 1 (ACC1)
[Arabidopsis thaliana] GI:11869927
Length = 2247
Score = 29.1 bits (62), Expect = 7.0
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 324 KSIFTSSTASRDDK-LAKIHEEIEPFNESTTSHEDFGTNEARIERKRLRKPHITMERTFT 382
K I + +S D+K + IEP S+E + AR+ L + ++++E F
Sbjct: 861 KGILEAHLSSCDEKERGALERLIEPLMSLAKSYEGGRESHARVIVHSLFEEYLSVEELFN 920
Query: 383 KDKITDPIEKL 393
+ + D IE++
Sbjct: 921 DNMLADVIERM 931
>At5g54480.1 68418.m06784 hypothetical protein
Length = 720
Score = 28.7 bits (61), Expect = 9.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 102 SDTSSEYEDRDIELFAASGDINRETVNWNQDHYQKTMN 139
S +SE + RD+E +G + ET N N+ Q+T N
Sbjct: 240 SSVASEIDKRDVEANTCNGQVADETDNSNEACAQETEN 277
>At3g10690.1 68416.m01286 DNA gyrase subunit A family protein
similar to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3).
{Clostridium acetobutylicum}; contains Pfam profiles
PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989:
DNA gyrase C-terminal domain beta-propeller
Length = 950
Score = 28.7 bits (61), Expect = 9.2
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 214 LGQTLSTLTEVTEPVRPEMLNVCNSLQKQFNSWFPDQDTGDSDD----SNEKSRKLITQM 269
L Q LST T + + + E + + + S D D+GD +D NE+ +++
Sbjct: 549 LEQLLSTRTNILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAVSEK 608
Query: 270 GLSPR-----FNKRSRRRCAEFVGDIEL 292
G R FN + R + VG + +
Sbjct: 609 GYVKRMKADTFNLQHRGTIGKSVGKLRV 636
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.129 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,603,356
Number of Sequences: 28952
Number of extensions: 488889
Number of successful extensions: 1090
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 16
length of query: 490
length of database: 12,070,560
effective HSP length: 84
effective length of query: 406
effective length of database: 9,638,592
effective search space: 3913268352
effective search space used: 3913268352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)
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