GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001488-TA|BGIBMGA001488-PA|IPR001766|Fork head
transcription factor
         (315 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...   107   1e-25
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...   101   7e-24
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   3.9  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score =  107 bits (256), Expect = 1e-25
 Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 2/101 (1%)

Query: 76  KPQHSYIGLIAMAILSSPERKLVLSDIYQHILDNYPYFRTRGPGWRNSIRHNLSLNDCFV 135
           KP +SYI LI MAI +SP++ L LS+IYQ I+D +P++R     W+NSIRH+LS NDCFV
Sbjct: 140 KPPYSYISLITMAIQNSPQKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 199

Query: 136 KAGRSAN--GKGHYWAIHPANVEDFRKGDFRRRKAQRKVRK 174
           K  R+ +  GKG +W++HP +   F  G + RR+ + K  K
Sbjct: 200 KVPRTPDKPGKGSFWSLHPDSGNMFENGCYLRRQKRFKDEK 240


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score =  101 bits (242), Expect = 7e-24
 Identities = 49/96 (51%), Positives = 65/96 (67%), Gaps = 5/96 (5%)

Query: 76  KPQHSYIGLIAMAILSSPERKLVLSDIYQHILDNYPYFRTRGPGWRNSIRHNLSLNDCFV 135
           KP +SY  LI MAI +SPE++L L+ IY++I+ N+PY+R    GW+NSIRHNLSLN CFV
Sbjct: 83  KPPYSYNALIMMAIRNSPEKRLTLNGIYEYIMRNFPYYRENKQGWQNSIRHNLSLNKCFV 142

Query: 136 KAGRSAN--GKGHYWAIHPANVEDF---RKGDFRRR 166
           K  R  +  GKG+YW + P+  + F     G  RRR
Sbjct: 143 KVPRHYDDPGKGNYWMLDPSAEDVFIGGTTGKLRRR 178


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 93  PERKLVLSDIYQHILDNYPYFRTRG 117
           P  K  +S+    +L+NYP F   G
Sbjct: 293 PNEKKNISEFINVVLNNYPDFSAAG 317


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.136    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,184
Number of Sequences: 317
Number of extensions: 3172
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 315
length of database: 114,650
effective HSP length: 57
effective length of query: 258
effective length of database: 96,581
effective search space: 24917898
effective search space used: 24917898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)