Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001488-TA|BGIBMGA001488-PA|IPR001766|Fork head
transcription factor
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0044 + 11556938-11557921 31 0.91
11_01_0404 + 3071412-3071464,3073572-3074970 31 1.2
03_04_0018 - 16484109-16484300,16484575-16484656,16484746-164848... 31 1.6
09_04_0525 + 18326429-18326780,18327870-18328068,18328597-18329458 30 2.1
08_01_0133 + 1062365-1063057,1063210-1063318,1063914-1064005,106... 30 2.1
06_03_0137 + 17066914-17067505,17067588-17067904 30 2.1
03_02_0440 - 8500068-8501252 30 2.1
11_06_0434 - 23512921-23513529 30 2.8
05_03_0368 - 13127536-13128429 30 2.8
05_01_0191 - 1380872-1382029 30 2.8
04_04_0837 + 28547815-28547970,28548073-28548783 30 2.8
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 29 3.7
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 29 3.7
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 29 3.7
12_01_0480 - 3776563-3777099 29 4.9
11_06_0559 + 24972403-24972445,24972590-24972680,24973911-249740... 29 4.9
11_06_0310 + 22274762-22275412,22275515-22275725,22276713-222773... 29 4.9
07_03_1228 - 25009736-25010965 29 4.9
12_02_0855 + 23703827-23704019,23704465-23704481,23705051-237052... 29 6.4
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 29 6.4
07_03_1495 + 26983415-26984797 29 6.4
06_03_0502 + 21493442-21494341 28 8.5
>08_02_0044 + 11556938-11557921
Length = 327
Score = 31.5 bits (68), Expect = 0.91
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 211 AGGGQPRKRQFDVASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEETRGP 270
A G P + + + +++ + E+ + + +PE D V ++Q+++ +EET GP
Sbjct: 156 AAGLTPPQPEENNTAVVVEQQQEEEEEEAAVTTPPQPESDTAVAVAEQQQQQEEEETAGP 215
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 240 DSSCDEEPEEDIDVVASDQEERGVDEETRGP 270
D+ D++ ED D +++E R VD RGP
Sbjct: 321 DAELDDDQSEDSDYEENEEEHRAVDTNIRGP 351
>03_04_0018 -
16484109-16484300,16484575-16484656,16484746-16484856,
16484937-16485188,16485274-16485677,16486035-16486952,
16486990-16487475,16487566-16487763
Length = 880
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 220 QFDVA-SLLAPDETPEKRQRR-DSSCDEEPEEDIDVVASDQEERGVD 264
+ D A S LAP+ T R+RR + S ++ P+E +V+A DQ+ + V+
Sbjct: 87 EMDTATSALAPERTGSGRKRRGERSKNKLPKETYNVIALDQDGKPVE 133
>09_04_0525 + 18326429-18326780,18327870-18328068,18328597-18329458
Length = 470
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 207 AARLAGGGQPRKRQFDVASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEE 266
AA GG+ R D AS + +E E + +EE E++ + EE G DEE
Sbjct: 12 AAAAVAGGKKEVRALDGASAIGEEEEVEVEVEEEEEAEEEREDE-----EEGEEDGGDEE 66
>08_01_0133 +
1062365-1063057,1063210-1063318,1063914-1064005,
1064399-1064560,1064718-1064834,1065029-1065127
Length = 423
Score = 30.3 bits (65), Expect = 2.1
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 9 SWPLGKDAPTVTAAAIDHYRLQLYNYAVAERLRLYPPTVAPCYGPYGPRLALSMSLLQQR 68
SWPL P + + L L + A A + L PP V P R AL S +
Sbjct: 18 SWPLPPSKPYLRFPSAP-LLLLLRSPAAASVIHLSPPPVTPLAVACDDRHALPDSDEPRN 76
Query: 69 ALQPEEPKPQHSYIGLIAMAILSSPERKLVLS 100
P+ P P + A A+ +SP L LS
Sbjct: 77 RNPPDHPAPLLAAAAAAAAAV-ASPHAALALS 107
>06_03_0137 + 17066914-17067505,17067588-17067904
Length = 302
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 164 RRRKAQRKVRKHMGLAVDDDGEDXXXXXXXXXXXXXXXXX-FWNAARLAGGGQPRKRQFD 222
RR +A++ + +G DDDGE+ W+AA A G PRKR
Sbjct: 41 RRNRARQPLAAQLGPG-DDDGEEVEDEEDFFFVSTPYLSTPSWSAAAAAAGASPRKRGDH 99
Query: 223 VASL 226
A+L
Sbjct: 100 QAAL 103
>03_02_0440 - 8500068-8501252
Length = 394
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 228 APDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEE 266
A P + +++ EEPE+ D VA D+EE DE+
Sbjct: 210 ADTAAPSSDEDDENNDQEEPEQQADEVAHDEEEEEDDED 248
>11_06_0434 - 23512921-23513529
Length = 202
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 230 DETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDE 265
DE EK D+ DEE +D + + D EE DE
Sbjct: 157 DEFDEKEDDSDNEDDEESSDDEEETSEDDEETSEDE 192
>05_03_0368 - 13127536-13128429
Length = 297
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 230 DETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEETR 268
D+ +R+RR+ SC+E+ E D D + R +E R
Sbjct: 220 DKKKSRRKRRERSCEEDSETDSDKKIKRRHHRKSSKEER 258
>05_01_0191 - 1380872-1382029
Length = 385
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 210 LAGGGQPRKRQFDVASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEE 266
+A P K A + AP +P K Q+ ++ + + EE + +AS QE+ V EE
Sbjct: 248 VAAAPSPTKDAAAAAEIAAP--SPRKSQKASAAAEAQHEERQEEMASVQEQEEVREE 302
>04_04_0837 + 28547815-28547970,28548073-28548783
Length = 288
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 212 GGGQPRKRQFDVASLLAPDETPEKRQRRDSSCDEEPEED--IDVVASDQEERGVDEE 266
GGG+ + DV +L KR R ++ DEE EE+ D D E DEE
Sbjct: 180 GGGEEEAGEGDVKPMLFGVAIGGKRSREENGEDEEEEEEEGADEDGEDDEVEEDDEE 236
>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 212 GGGQPRKRQFDVASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEETRG 269
GGG R R +DV T +R+R + + +P + A Q+ G DE T G
Sbjct: 1355 GGGTNRGRGYDVGK--PSHVTNAERRRGGTHLEYQPVGSYNKTADFQQNPGTDERTEG 1410
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 213 GGQPRKRQFDVASLLAPDETPEKRQRRD---SSCDEEPEEDIDVVASDQEERGVDE 265
G + +KR+ S P + R+RR + DEE E+D D + D +E D+
Sbjct: 183 GRKKKKRKPSRVSKAKPKKPTSGRRRRKRWATDDDEEEEDDADFIVEDDQEEEEDD 238
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 230 DETPEKRQRRDSSCD-EEPEEDIDVVASDQEERGVDEE 266
D TP K++ + D +E E+D D + SD EE D E
Sbjct: 442 DITPSKKRNKALEYDTDEDEDDADPMKSDSEEDDYDSE 479
>12_01_0480 - 3776563-3777099
Length = 178
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 154 NVEDFRKGDFRRRKAQRKVRKHMGLAVDDDGED 186
N+E + + +A+R+ + G+ VDDDG+D
Sbjct: 100 NMEAVEEDEVEEEEARRRWWRRRGMVVDDDGDD 132
>11_06_0559 +
24972403-24972445,24972590-24972680,24973911-24974030,
24974121-24974237,24974745-24974840,24975317-24975610,
24977153-24977258,24977365-24977566,24977671-24977792
Length = 396
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 222 DVASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDE 265
+ +L AP +T + Q SC EEP + I + + E ++E
Sbjct: 218 EAQTLRAPQQTSDAAQHNIVSCKEEPSQQILPIHQPRTEVSIEE 261
>11_06_0310 +
22274762-22275412,22275515-22275725,22276713-22277388,
22277739-22277816,22278228-22278573
Length = 653
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 229 PDETPEKRQRRDSSCDEE--PEEDIDVVASDQEERGVDE 265
P+ PEK +++ S +E EE+ + AS EE+G +E
Sbjct: 615 PEPEPEKMKKKAGSSSQERSSEEEEESTASSSEEKGSEE 653
>07_03_1228 - 25009736-25010965
Length = 409
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 213 GGQPRKRQFDVASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEETRGPLT 272
GG+ + + + P+E E+ + + +EE EE+ D+ + EE + E P+
Sbjct: 332 GGEEEEEEEEEEEEEEPEEGAEEEEDDEEEDEEEEEEEEDIEEDENEEEEEEVEDTMPVV 391
Query: 273 T 273
+
Sbjct: 392 S 392
>12_02_0855 +
23703827-23704019,23704465-23704481,23705051-23705254,
23705486-23705605,23705867-23706472
Length = 379
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 207 AARLAGGGQPRKRQFDVASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQE 259
AA +A G+ +KR ++ P + E + DEE EED D DQE
Sbjct: 12 AAAMADPGRGKKRPPSPSTPPTPSDDGEDSDDSCAVSDEEEEEDEDEGEEDQE 64
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 43 YPPTVAPCYGP--YGPRLALSMSLLQQRALQPEEPKPQHSYIGLIAMAILSSPERKLVLS 100
Y PT P Y P Y + A + LQQ+ L P P + +A +L+ +V
Sbjct: 21 YKPTSRPHYQPPHYHGQPAAPPAPLQQQHLGPHGVTPSTVGVAALAHDLLNFESTSMVPD 80
Query: 101 DIYQHILDN 109
+ QH++ +
Sbjct: 81 GLSQHVVSS 89
>07_03_1495 + 26983415-26984797
Length = 460
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 230 DETPEKRQRRDSSCD---EEP-EEDIDVVASDQEERGVDEE 266
DE E++QR +++ + +EP EED++ VA D+E + EE
Sbjct: 270 DEDEEEQQRAEANEEGSKQEPIEEDVERVAGDKESERIVEE 310
>06_03_0502 + 21493442-21494341
Length = 299
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 226 LLAPDETPEKRQRRDSSCDEEPE---EDIDVVASDQEERGVD 264
L DE PE + D + D+EPE +D DV A + + R D
Sbjct: 218 LRVADEDPEPEEFDDEADDDEPEMDDDDADVGAGEVDARADD 259
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.136 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,926,910
Number of Sequences: 37544
Number of extensions: 449845
Number of successful extensions: 1682
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1628
Number of HSP's gapped (non-prelim): 55
length of query: 315
length of database: 14,793,348
effective HSP length: 82
effective length of query: 233
effective length of database: 11,714,740
effective search space: 2729534420
effective search space used: 2729534420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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