Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001488-TA|BGIBMGA001488-PA|IPR001766|Fork head
transcription factor
(315 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 31 0.76
At1g11440.1 68414.m01314 expressed protein 31 0.76
At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta id... 31 1.0
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa... 31 1.3
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 30 1.8
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 30 2.3
At3g19895.1 68416.m02519 expressed protein 30 2.3
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 30 2.3
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 30 2.3
At1g10720.1 68414.m01221 BSD domain-containing protein contains ... 30 2.3
At3g11450.1 68416.m01396 DNAJ heat shock N-terminal domain-conta... 29 3.1
At2g45900.1 68415.m05708 expressed protein 29 3.1
At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF... 29 3.1
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 29 3.1
At1g68790.1 68414.m07863 expressed protein 29 3.1
At3g57930.1 68416.m06457 expressed protein 29 4.1
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 28 7.1
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 28 7.1
At1g70510.1 68414.m08115 homeobox protein knotted-1 like 2 (KNAT... 28 7.1
At5g19300.1 68418.m02300 expressed protein contains Pfam profile... 28 9.4
At2g12875.1 68415.m01402 hypothetical protein 28 9.4
At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d... 28 9.4
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 31.5 bits (68), Expect = 0.76
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 230 DETPEKRQRRDSSC-----DEEPEEDIDVVASDQEERGVDE 265
+E PEKR++ DSS +EEPE +S QEE + E
Sbjct: 350 EEEPEKREKEDSSSQEESKEEEPENKEKEASSSQEENEIKE 390
>At1g11440.1 68414.m01314 expressed protein
Length = 363
Score = 31.5 bits (68), Expect = 0.76
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 229 PDET-PEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEETR 268
P ET E+ Q +D DEE E++ D D+EE DEE +
Sbjct: 209 PIETIKEQEQEQDEDYDEESEDEDDGDDDDEEEEEGDEEAK 249
>At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta
identical to SP|P48006 Elongation factor 1-beta
(EF-1-beta) {Arabidopsis thaliana}
Length = 231
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 232 TPEKRQRRDSSCDEEPEEDIDVVASD-QEERGVDEETRGPLTTATQ 276
TP +D++ DEE ++D+D+ + +EE+ EE + +T+
Sbjct: 91 TPPAADSKDAAADEEDDDDVDLFGEETEEEKKAAEERAASVKASTK 136
>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
family protein low similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 427
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 230 DETPEKRQRRDSSCDEEPEEDID-VVASDQEERGVDEETR 268
+E P+K +D S DEE + D V A D+E G +E+++
Sbjct: 34 EEDPDKMDEKDESGDEEDDVKRDQVEAEDEEALGEEEDSK 73
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 235 KRQRRDSSCDEEPEEDIDVVASDQEERGVDEET-RGPL 271
+ +R DS DEE E DI SD E R D + RG L
Sbjct: 529 RSEREDSDYDEELELDIQTSLSDDEGRDTDSNSMRGSL 566
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 223 VASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEETRGPLTTATQYPLLGG 282
V+SLL E E+ + + +EE E+ D ++EE +EE G + +
Sbjct: 78 VSSLLKLKEDVEEEEEEEEEEEEEEEDGEDEEEEEEEEEEEEEEEHGYCVGDFVWGKIKN 137
Query: 283 --WWP 285
WWP
Sbjct: 138 HPWWP 142
>At3g19895.1 68416.m02519 expressed protein
Length = 554
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 82 IGLIAMAILSSPERKLVL-SDIYQHILDNYP 111
+G +A A LS+ R L L SD++ H+LD++P
Sbjct: 160 LGKVARAALSAIARHLRLRSDVFNHMLDDFP 190
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 224 ASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEETRGPLT 272
+S+L PDE P Q+ SS D +P + +V S++ +D++ P++
Sbjct: 2143 SSMLEPDELPNAGQKGHSSIDLQP---LVLVTSNENAMSLDDKDYDPIS 2188
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 215 QPRKRQFDVASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVD 264
QP + S P E E+R RD C E +++ ++ E R D
Sbjct: 2735 QPEDENRNSLSHCEPSEVVEQRDSRDQVCIGSVESQVEISSAILENRSAD 2784
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 224 ASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEETRGPLT 272
+S+L PDE P Q+ SS D +P + +V S++ +D++ P++
Sbjct: 2143 SSMLEPDELPNAGQKGHSSIDLQP---LVLVTSNENAMSLDDKDYDPIS 2188
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 215 QPRKRQFDVASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVD 264
QP + S P E E+R RD C E +++ ++ E R D
Sbjct: 2735 QPEDENRNSLSHCEPSEVVEQRDSRDQVCIGSVESQVEISSAILENRSAD 2784
>At1g10720.1 68414.m01221 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 429
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 217 RKRQFDVASLLAPDETPEKRQRRDSSCDEEPEEDIDVVA 255
R R +D+ LA PE + + DEE EE+ ++ A
Sbjct: 134 RFRSWDLEEKLAEGNDPEDEEEEEEETDEEEEEEEEIAA 172
>At3g11450.1 68416.m01396 DNAJ heat shock N-terminal
domain-containing protein / cell division
protein-related similar to GlsA [Volvox carteri f.
nagariensis] GI:4633129; contains Pfam profiles PF00226
DnaJ domain, PF00249 Myb-like DNA-binding domain
Length = 663
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 230 DETPEKRQRRDSSCDEEPEEDID-VVASDQEERGVDEETRGPLTTATQ 276
+E EK+Q++D+ + +++ D +A+++E+R +EE + +A Q
Sbjct: 320 EEKAEKQQKKDAKIQAKKKQEEDAAIAAEEEKRRKEEEEKRAAESAQQ 367
>At2g45900.1 68415.m05708 expressed protein
Length = 720
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 222 DVASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEER 261
D+ L+A D+ + ++ D+ C ++D+V D EE+
Sbjct: 114 DINVLIAGDDDDDHAEKSDNECPIVSHNEVDMVNDDSEEK 153
>At2g18110.1 68415.m02105 elongation factor 1-beta, putative /
EF-1-beta, putative nearly identical to eEF-1beta
[Arabidopsis thaliana] GI:398606
Length = 231
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 232 TPEKRQRRDSSCDEEPEEDIDVVASD-QEERGVDEETRGPLTTATQ 276
TP +D++ +EE ++D+D+ + +EE+ EE + +T+
Sbjct: 91 TPPAADSKDTAAEEEDDDDVDLFGEETEEEKKAAEERAASVKASTK 136
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 229 PDETPEKRQRRDSSCDEEPEEDIDVVASDQEE 260
P+E PE+ D D E E++DV ++QEE
Sbjct: 1170 PEEDPEEDPEEDPEEDPEECEEMDVANTEQEE 1201
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 213 GGQPRKRQFDVASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEETRGPLT 272
GG+ +KRQ V P +T + +R + EE + A++++ER D+ + P
Sbjct: 920 GGRRKKRQIAVPVSQTPGQTRYQLRRHRNVGTEEDKAQASKGATEKQERVNDDIRKVPSP 979
Query: 273 TATQYP 278
T+ P
Sbjct: 980 KETRTP 985
>At3g57930.1 68416.m06457 expressed protein
Length = 141
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 235 KRQRRDSSCDEEPEEDIDVVASDQEERGVDEETRGPLTT 273
KR R +E EE+ ++V EE D++T G +T+
Sbjct: 32 KRGRPQKPVKDEEEEEEELVKKTDEEEDKDDDTNGSVTS 70
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 225 SLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEET 267
S LA D E+R +R+ + +ED + ++EE +DE T
Sbjct: 603 SKLADDGNSERRSKRNYRSRSQRDEDGKMEQGEEEESSMDEVT 645
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 225 SLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEET 267
S LA D E+R +R+ + +ED + ++EE +DE T
Sbjct: 603 SKLADDGNSERRSKRNYRSRSQRDEDGKMEQGEEEESSMDEVT 645
>At1g70510.1 68414.m08115 homeobox protein knotted-1 like 2 (KNAT2)
(K1) identical to homeobox protein knotted-1 like 2 (
KNAT2/ ATK1) SP: from [Arabidopsis thaliana]
Length = 310
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 242 SCDEEPEEDIDVVASDQEERGVDEETRGPL 271
S DEE ED D+ A D ++R D + + L
Sbjct: 184 SSDEELREDDDIAADDSQQRSNDRDLKDQL 213
>At5g19300.1 68418.m02300 expressed protein contains Pfam profile
PF02598: Uncharacterized ACR, COG2106
Length = 398
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 235 KRQRRDSSCDEEPEEDIDVVASDQEERGVDEETRGPLTTA 274
K++R++ + +EEPE + +EE+G EE R ++ A
Sbjct: 64 KKKRKNKNQEEEPELVTEKTKVQEEEKGNVEEGRATVSIA 103
>At2g12875.1 68415.m01402 hypothetical protein
Length = 325
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 222 DVASLLAPDETPEKRQRRDSSCDEEPEEDIDVVASDQEERGVDEETRGPLTTATQYPLL 280
D+ +L +++ + + + +EE E+ + ++EE +EE + +TT P++
Sbjct: 8 DLNPVLEAEKSHKNEEEKSEKDEEEKSEEEESKEEEKEEEEKEEEKKKGMTTKESPPMI 66
>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
domain-containing protein similar to SP|Q9P6R9 Cell
cycle control protein cwf22 {Schizosaccharomyces pombe};
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 900
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 136 KAGRSANGKG-HYWAIHPANVEDFR-KGDFRRRKAQRKVRKHMGLAVDDDGE 185
K GR + +G A P++ ED R + RR++QRK R H D++GE
Sbjct: 169 KQGRERSHRGSRVIADKPSDEEDDRQRSRGGRRESQRKRRDHRASDDDEEGE 220
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.136 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,413,867
Number of Sequences: 28952
Number of extensions: 321542
Number of successful extensions: 1271
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1223
Number of HSP's gapped (non-prelim): 39
length of query: 315
length of database: 12,070,560
effective HSP length: 81
effective length of query: 234
effective length of database: 9,725,448
effective search space: 2275754832
effective search space used: 2275754832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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