GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001487-TA|BGIBMGA001487-PA|IPR000618|Insect cuticle
protein
         (214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.68 
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    27   1.6  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   3.6  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   3.6  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   4.8  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    26   4.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 101  PIAQPAKIAYAAPVQNIAYAAPVPKLAYSAPVTKL----AYPGSITKVAYAPAPVTYAQS 156
            P+++P   + AAP   +A   PVPKL+  AP   L    A P  +   A  P P+  +  
Sbjct: 995  PLSKPVSTSPAAP---LARVPPVPKLSSKAPPVPLPSADAPPIPVPSTA-PPVPIPTSTP 1050

Query: 157  PLTK 160
            P+ K
Sbjct: 1051 PVPK 1054


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 42  EYSVHDDHSGDIKQQKESRAGDVVQGFYSLVQPDGVHRIVEYTADNE 88
           E SV+DD S D+  +KE+ A   ++    +V+    H      ++N+
Sbjct: 309 EDSVNDDSSSDVSDEKETEAKHEIRAPAIIVRETSSHPSTAVPSEND 355


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 103 AQPAKIAYAAPVQNIAYAAPVPKLAYSAPVTKLAYPGSITKVAYAPAPV 151
           +Q + I  + P+ + + A+  P+ + +  V +  +  S+ KVA APAPV
Sbjct: 478 SQESNIIESEPL-SASNASGKPRTSVNRLVDRYNHTSSLNKVAAAPAPV 525


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 105 PAKIAYAAPVQNIAYAAPVPKLAYSAPV 132
           PA++ +  P QN+A+    PKL    P+
Sbjct: 588 PAEVVHLHPTQNLAFIKYDPKLLGDTPI 615


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 36  PAHYDFEYSVHDDHSGDIKQQKESRAGDVVQGFYSLVQPDGV 77
           P  ++   S H+DHS   +   +    D +Q F    Q DG+
Sbjct: 417 PWKHEEHCSCHEDHSVHERPSAKGALEDYIQTFVETFQIDGI 458


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 99  GHPIAQPAKIAYAAPVQNIAYAAPVPKLAY 128
           G P+ Q A +  A PV+ + Y AP P   +
Sbjct: 107 GIPLGQ-APVGLAGPVRGVGYTAPPPPAGF 135


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 100  HPIAQP-AKIAYAAPVQNIAYAAPVPKLAYSAPVTKLAYPGSITKVAYAPAPVTYAQS 156
            HP++ P  +   AAP Q  A   P P ++   P +    P         P P + A S
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,144
Number of Sequences: 5004
Number of extensions: 27914
Number of successful extensions: 86
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 11
length of query: 214
length of database: 2,362,478
effective HSP length: 70
effective length of query: 144
effective length of database: 2,012,198
effective search space: 289756512
effective search space used: 289756512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)