GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001487-TA|BGIBMGA001487-PA|IPR000618|Insect cuticle
protein
         (214 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93387-4|CAI91177.1|  333|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z93387-3|CAB07652.1|  352|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AC024200-6|AAF35998.1|  314|Caenorhabditis elegans Hypothetical ...    32   0.27 
AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical ...    31   0.47 
Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z70756-9|CAA94796.1|  228|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z70756-11|CAI46587.1|  228|Caenorhabditis elegans Hypothetical p...    29   3.3  
U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved olig...    29   3.3  
U23411-1|AAC46730.2|  231|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    29   3.3  
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    28   4.4  

>Z93387-4|CAI91177.1|  333|Caenorhabditis elegans Hypothetical
           protein T02E9.2b protein.
          Length = 333

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 62  GDVVQGFYSLVQPDGVHRIVEYTADNEHGFNANVRYEGHPIAQPAKIAYAA---PVQNIA 118
           G++VQG+    Q  G     +Y     +G  A   ++  P     +  Y A   PVQ   
Sbjct: 47  GNIVQGYVGAPQQGGYAAAPQYPQQGGYG-GAQQGFQAAPAPYQPQGGYQAGPAPVQGYQ 105

Query: 119 YAAPVPKLAYSAPVTKLAYPGSITKVAYAPAPVTYAQSP 157
             A VP   Y APV     P  +   A   A   Y  +P
Sbjct: 106 PQAQVPAGGYQAPVQPAPGPAEVAP-AQVQAGGNYQDAP 143


>Z93387-3|CAB07652.1|  352|Caenorhabditis elegans Hypothetical
           protein T02E9.2a protein.
          Length = 352

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 62  GDVVQGFYSLVQPDGVHRIVEYTADNEHGFNANVRYEGHPIAQPAKIAYAA---PVQNIA 118
           G++VQG+    Q  G     +Y     +G  A   ++  P     +  Y A   PVQ   
Sbjct: 47  GNIVQGYVGAPQQGGYAAAPQYPQQGGYG-GAQQGFQAAPAPYQPQGGYQAGPAPVQGYQ 105

Query: 119 YAAPVPKLAYSAPVTKLAYPGSITKVAYAPAPVTYAQSP 157
             A VP   Y APV     P  +   A   A   Y  +P
Sbjct: 106 PQAQVPAGGYQAPVQPAPGPAEVAP-AQVQAGGNYQDAP 143


>AC024200-6|AAF35998.1|  314|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.9 protein.
          Length = 314

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 107 KIAYAAPVQNIAYAAPVPKLAYSAPVTKLAYPGSITKVAYAPAPVTYAQSP 157
           K   AAP      +AP P  A  AP        S+TK A AP PV  A +P
Sbjct: 80  KTETAAP--ETTQSAPAPAKAAPAPTVAAPASSSVTKSAAAPKPVVSAPAP 128


>AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical
           protein B0205.10 protein.
          Length = 455

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 17/40 (42%), Positives = 18/40 (45%)

Query: 111 AAPVQNIAYAAPVPKLAYSAPVTKLAYPGSITKVAYAPAP 150
           AAPVQ     AP P+    AP T    P   T    APAP
Sbjct: 112 AAPVQETPQVAPAPETPAPAPETPAPAPVQETPQVVAPAP 151


>Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical
           protein F47B8.5 protein.
          Length = 579

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 74  PDGVHRIVEYTADNEHGFNANVRYEGHPIAQPAKIAYAAPVQNIAYA---APVPKLA-YS 129
           P    R+    A+ E    A       P   PA    AAP    A A   AP P+ A  +
Sbjct: 460 PAKKRRVARDYAEGEAAPAAPAEPAPAPAPAPAPAPEAAPAPEPAPAPAPAPAPEAAPAA 519

Query: 130 APVTKLAYPGSITKVAYAPAPVTYA 154
           AP    A P  + +VA APAP   A
Sbjct: 520 APDAAPAEPAPVPEVAPAPAPAPAA 544


>Z70756-9|CAA94796.1|  228|Caenorhabditis elegans Hypothetical
           protein T06E4.10 protein.
          Length = 228

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 103 AQPAKIAYAAPVQNIAYAAPVPKLAYSAPVTKLAYPGSITKVAYAPAPVTYAQSPL 158
           A  A  A+AAP    A  AP    A +AP    AY   +   A+APAPV  A   L
Sbjct: 89  AVAAAPAFAAPAYAPALGAPAYAPALAAP----AYAPGLAAPAFAPAPVVAAAPAL 140


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 29  AYAEHEAPAHYDFEYSVHDDHSGDIKQQKESRAGDVVQGFYSLVQPDGVHRI 80
           AY+       YDF  S+  +    +K+Q E  A  +V   Y L +PDG  ++
Sbjct: 161 AYSMRNTQEKYDFGQSLKQETYEALKEQLEKLACKIVNNLY-LSEPDGPFQV 211


>AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical
           protein K08D12.6 protein.
          Length = 668

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/65 (27%), Positives = 26/65 (40%)

Query: 93  ANVRYEGHPIAQPAKIAYAAPVQNIAYAAPVPKLAYSAPVTKLAYPGSITKVAYAPAPVT 152
           A+   E  P+A PA    AAP  +   AAP P    +      +   +       PAP  
Sbjct: 41  ADAPVEQAPVAVPAPAPAAAPAPDCGSAAPAPAAPAATDSGYRSKRNAYGDEQVTPAPAA 100

Query: 153 YAQSP 157
            A++P
Sbjct: 101 AAEAP 105



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 93  ANVRYEGHPIAQPAKIAYAAPVQNIAYAAPVPKLAYSAPVTKL-AYPGSITKVAYAPAPV 151
           A+   E  P+A PA    AAP  +   AAP P  A +A  +   +   +       PAP 
Sbjct: 308 ADAPVEQAPVAVPAPAPAAAPAPDCGSAAPAPAAAPAATDSGYRSKRNAYGDEQVTPAPA 367

Query: 152 TYAQSP 157
             A++P
Sbjct: 368 AAAEAP 373



 Score = 27.5 bits (58), Expect = 7.7
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 93  ANVRYEGHPIAQPAKIAYAAPVQNIAYAAPVPKLAYSAPVTKLAY---PGSITKVAYAPA 149
           A+   E  P+A PA    AAP  +   AAP P  A +   T   Y     S       PA
Sbjct: 175 ADAPVEQAPVAVPAPAPAAAPAPDCGSAAPAP-AAPAPAATDSGYRSKRNSYGDEQVTPA 233

Query: 150 PVTYAQSP 157
           P   A +P
Sbjct: 234 PAAAAPAP 241


>Z70756-11|CAI46587.1|  228|Caenorhabditis elegans Hypothetical
           protein T06E4.12 protein.
          Length = 228

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 101 PIAQPAKIAYAAPVQNIA---YAAPVPKLAYSAPVTKLAYPGSITKVA---YAPAPVTYA 154
           P+  P     AAPV   A    AAP P LA  AP+  LA P  +   A    APAPV +A
Sbjct: 42  PVLAPGVAPVAAPVLAAAPTVLAAPAPLLAPPAPL--LAPPAPVLAAAPAFAAPAPV-FA 98

Query: 155 QSP 157
             P
Sbjct: 99  APP 101


>U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 5 protein.
          Length = 580

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 53  IKQQKESRAGDVVQGFYSLVQPDGVHRIVEYTADNEHGFNANVRYEGHPIAQPAKI 108
           +K   ++ AG+V+    ++V PDG  + +    D E     +       IA+PAKI
Sbjct: 335 VKLNSDADAGNVISAMNNVVWPDGNPKRLSIVYDTEDNLIKHRNGLEATIAEPAKI 390


>U23411-1|AAC46730.2|  231|Caenorhabditis elegans Hypothetical
           protein T25E4.1 protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)

Query: 110 YAAPVQNIAYAAPVPK--LAYSAPVTKLAYPGSITKVAYAPAPVTYA 154
           Y AP   +A AA VP+  L ++AP   +A   ++ + A+AP PV  A
Sbjct: 32  YIAP---LAGAAQVPRNPLFFAAPALPVAAAPALVRPAFAPVPVAAA 75


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
           protein W09B6.1a protein.
          Length = 2054

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 41  FEYSVHDDHSGDIKQQKESRAGDVVQGFYSLVQ 73
           FE  V+DD  G+IK+   SR  DVV+  YS  Q
Sbjct: 844 FEGKVYDDSVGEIKEDHLSRK-DVVRTIYSHTQ 875


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 101 PIAQPAKIAYAAPVQNIAYAA-----PVPKLAYSAPVTKLAYP 138
           P AQPA    A P++  A+AA     P+P+   SAP    A P
Sbjct: 210 PTAQPAHHPPAPPIRQAAHAAESSPPPIPQRKSSAPAPTAAAP 252


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,119,122
Number of Sequences: 27539
Number of extensions: 160720
Number of successful extensions: 370
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 25
length of query: 214
length of database: 12,573,161
effective HSP length: 78
effective length of query: 136
effective length of database: 10,425,119
effective search space: 1417816184
effective search space used: 1417816184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)