GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001487-TA|BGIBMGA001487-PA|IPR000618|Insect cuticle
protein
         (214 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.41 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   3.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   3.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
          protein protein.
          Length = 138

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 38 HYDFEYSVHDDHSGDIKQQKESRAGDVVQGFYSLVQPDGVHRIVEYTADNEHGF 91
          +++    +    SG  KQ  ++    V QG  S   PDG    + Y AD E+GF
Sbjct: 45 NFETSNGISHQESGQPKQV-DNETPVVSQGSDSYTAPDGQQVSITYVAD-ENGF 96


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 115 QNIAYAAP-VPKLAYSAPVTKLAYPGSITKVAYAPAPVTYAQSPL 158
           + I YA P V K  + AP    A+ G ++   +    + Y Q P+
Sbjct: 49  EGIPYALPPVGKFRFKAPQKIPAWIGELSATKFGFPCLQYTQLPV 93


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 115 QNIAYAAP-VPKLAYSAPVTKLAYPGSITKVAYAPAPVTYAQSPL 158
           + I YA P V K  + AP    A+ G ++   +    + Y Q P+
Sbjct: 49  EGIPYALPPVGKFRFKAPQKIPAWIGELSATKFGFPCLQYTQLPV 93


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/28 (25%), Positives = 17/28 (60%)

Query: 84  TADNEHGFNANVRYEGHPIAQPAKIAYA 111
           T+   HGF+A++R     +  P+++ ++
Sbjct: 16  TSAGGHGFDAHLRGPSFVMEPPSRVEFS 43


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/28 (25%), Positives = 17/28 (60%)

Query: 84  TADNEHGFNANVRYEGHPIAQPAKIAYA 111
           T+   HGF+A++R     +  P+++ ++
Sbjct: 16  TSAGGHGFDAHLRGPSFVMEPPSRVEFS 43


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,551
Number of Sequences: 429
Number of extensions: 1640
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 214
length of database: 140,377
effective HSP length: 55
effective length of query: 159
effective length of database: 116,782
effective search space: 18568338
effective search space used: 18568338
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)