Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001486-TA|BGIBMGA001486-PA|IPR000618|Insect cuticle
protein
         (265 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   2.1  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    27   2.8  

>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 214 VAKIAYSAPVAKIAYSAPIAKVAYAAPVAKIAYNSAPLTQVTFSSPAI-SYHH 265
           V K ++SAPV  +  +    +     PVAK +   AP     F  P    YHH
Sbjct: 38  VKKPSHSAPVTPVRSARSSMEQPTFRPVAKNSVTVAPARAAGFCPPQFEEYHH 90


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 219 YSAPVAKI-AYSAPIAKVAYAAPVAKIAYNSAPLTQVTFSSPAISY 263
           Y+ P+  +    + +  VAY  PV  I   ++PLT  +F++  + Y
Sbjct: 357 YATPLPAVPTVLSGLPSVAYTPPVMHIPTTNSPLTPQSFTNSFLGY 402


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 962,108
Number of Sequences: 5004
Number of extensions: 33052
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 2
length of query: 265
length of database: 2,362,478
effective HSP length: 71
effective length of query: 194
effective length of database: 2,007,194
effective search space: 389395636
effective search space used: 389395636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)