Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001486-TA|BGIBMGA001486-PA|IPR000618|Insect cuticle
protein
         (265 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10572| Best HMM Match : Glyco_hydro_12 (HMM E-Value=3)              31   1.3  
SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)                28   9.1  
SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  
SB_2716| Best HMM Match : PD40 (HMM E-Value=0.00088)                   28   9.1  

>SB_10572| Best HMM Match : Glyco_hydro_12 (HMM E-Value=3)
          Length = 294

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/54 (31%), Positives = 24/54 (44%)

Query: 21  ITDTAHKEKKVLVSWCNFFLGIRNFDKSYHALIVTAKTCLFICNLPACHKPLKS 74
           I D    E   LV W   F+ ++  D S     +  K  LF+CNL  C   L++
Sbjct: 117 IYDRRRHEYSTLVLWYGNFITLKATDVSTSLSKLDKKYILFLCNLRTCLSDLQA 170


>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
          Length = 718

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 217 IAYSAPVAKIAYSAPIAKVAYAAPVAKIAYNSAPLTQVTFSSP 259
           I Y  P+  I Y  P   + Y  P   I Y   P   +T+  P
Sbjct: 538 ITYPVPLMVITYPVPFMVITYPVPFMVITY-PVPFMVITYPVP 579


>SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 109 HEAPAHYDFEYSVHDEQSGDIKQQKESRAGDAVQGFYSLVQPDGVHRIVEYTSDQVNGFN 168
           H   AH           S  + Q       D  + ++ LV PD +H    Y   + N  N
Sbjct: 434 HHQEAHSGGHAHTERGSSSHLPQLTNVSNDDNKEAYHMLVHPDNIHDHHHYLPYEANKDN 493

Query: 169 AYVRYEGH 176
              R++G+
Sbjct: 494 KKGRHQGY 501


>SB_2716| Best HMM Match : PD40 (HMM E-Value=0.00088)
          Length = 248

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 216 KIAYSAPVAKIAYSAPIAKVAYAAPVAKIAYNSA 249
           KI YS    KI YS    K+ Y+    KI Y+S+
Sbjct: 66  KIVYSPSGEKIVYSPSGEKIVYSPSGEKIVYSSS 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,907,557
Number of Sequences: 59808
Number of extensions: 228987
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 560
Number of HSP's gapped (non-prelim): 19
length of query: 265
length of database: 16,821,457
effective HSP length: 81
effective length of query: 184
effective length of database: 11,977,009
effective search space: 2203769656
effective search space used: 2203769656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)