Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001486-TA|BGIBMGA001486-PA|IPR000618|Insect cuticle
protein
         (265 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036533-1|AAH36533.1|  748|Homo sapiens junctophilin 3 protein.       33   0.78 
AB042640-1|BAB11987.1|  620|Homo sapiens junctophilin type3 prot...    33   0.78 
AB042636-1|BAB11983.1|  748|Homo sapiens junctophilin type3 prot...    33   0.78 

>BC036533-1|AAH36533.1|  748|Homo sapiens junctophilin 3 protein.
          Length = 748

 Score = 33.5 bits (73), Expect = 0.78
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 105 AYAEHEAPAHYDFEYSVHDEQSGDIKQQKESRAGDAVQGFYSLVQPDG 152
           A A     AH+  + SV +E+ GDI+   E RAGD  +  +   Q  G
Sbjct: 491 APAARNKVAHFSRQVSVDEERGGDIQMLLEGRAGDCARSSWGEEQAGG 538


>AB042640-1|BAB11987.1|  620|Homo sapiens junctophilin type3
           protein.
          Length = 620

 Score = 33.5 bits (73), Expect = 0.78
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 105 AYAEHEAPAHYDFEYSVHDEQSGDIKQQKESRAGDAVQGFYSLVQPDG 152
           A A     AH+  + SV +E+ GDI+   E RAGD  +  +   Q  G
Sbjct: 363 APAARNKVAHFSRQVSVDEERGGDIQMLLEGRAGDCARSSWGEEQAGG 410


>AB042636-1|BAB11983.1|  748|Homo sapiens junctophilin type3
           protein.
          Length = 748

 Score = 33.5 bits (73), Expect = 0.78
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 105 AYAEHEAPAHYDFEYSVHDEQSGDIKQQKESRAGDAVQGFYSLVQPDG 152
           A A     AH+  + SV +E+ GDI+   E RAGD  +  +   Q  G
Sbjct: 491 APAARNKVAHFSRQVSVDEERGGDIQMLLEGRAGDCARSSWGEEQAGG 538


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,218,991
Number of Sequences: 224733
Number of extensions: 1038536
Number of successful extensions: 2252
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2249
Number of HSP's gapped (non-prelim): 3
length of query: 265
length of database: 73,234,838
effective HSP length: 89
effective length of query: 176
effective length of database: 53,233,601
effective search space: 9369113776
effective search space used: 9369113776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)