Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001486-TA|BGIBMGA001486-PA|IPR000618|Insect cuticle
protein
         (265 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC024817-14|AAY86301.1|  354|Caenorhabditis elegans Hypothetical...    28   6.0  

>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 105 AYAEHEAPAHYDFEYSVHDEQSGDIKQQKESRAGDAVQGFYSLVQPDGVHRI 156
           AY+       YDF  S+  E    +K+Q E  A   V   Y L +PDG  ++
Sbjct: 161 AYSMRNTQEKYDFGQSLKQETYEALKEQLEKLACKIVNNLY-LSEPDGPFQV 211


>AC024817-14|AAY86301.1|  354|Caenorhabditis elegans Hypothetical
          protein Y54G2A.45 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 62 ICNLPACHKPLKSVINC 78
          +CN PAC   +K V+NC
Sbjct: 37 LCNTPACVNTIKEVLNC 53


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,208,217
Number of Sequences: 27539
Number of extensions: 184372
Number of successful extensions: 396
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 2
length of query: 265
length of database: 12,573,161
effective HSP length: 80
effective length of query: 185
effective length of database: 10,370,041
effective search space: 1918457585
effective search space used: 1918457585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)