Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001486-TA|BGIBMGA001486-PA|IPR000618|Insect cuticle
protein
         (265 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23720.1 68414.m02994 proline-rich extensin-like family prote...    31   1.1  
At4g13390.1 68417.m02092 proline-rich extensin-like family prote...    29   2.4  
At3g54580.1 68416.m06039 proline-rich extensin-like family prote...    29   3.2  
At5g35190.1 68418.m04170 proline-rich extensin-like family prote...    28   5.6  
At1g26320.1 68414.m03210 NADP-dependent oxidoreductase, putative...    28   5.6  
At4g08410.1 68417.m01390 proline-rich extensin-like family prote...    28   7.4  
At5g06640.1 68418.m00750 proline-rich extensin-like family prote...    27   9.8  

>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 895

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 219 YSAPVAKIAYSAPIAKVAYAAPVAKIAYNSAPLTQVTFSSPAISY 263
           YS+P     YS P  KV Y +P     YNS P       SP I Y
Sbjct: 817 YSSPPPPTYYS-PSPKVEYKSPPPPYVYNSPPPPAYYSPSPKIEY 860



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 216 KIAYSAPVAKIAYSAPIAKVAYAAPVAKIAYNSAPLTQVTFSSPAISYH 264
           KI Y +P     Y +P     Y +P  K AY S+P   V +SSP   Y+
Sbjct: 552 KIEYKSPPTPYVYHSP-PPPPYYSPSPKPAYKSSPPPYV-YSSPPPPYY 598


>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 429

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 219 YSAPVAKIAYSAPIAKVAYAAPVAKIAYNSAPLTQVTFSSPAISY 263
           Y++P     YS P  KV Y +P     YNS P       SP I+Y
Sbjct: 372 YNSPPPPPYYS-PFPKVEYKSPPPPYIYNSPPPPPYYSPSPKITY 415



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 219 YSAPVAKIAYSAPIAKVAYAAPVAKIAYNSAPLTQVTFSSPAISY 263
           YS P     YS P  KV Y +P A   Y+S P       SP ++Y
Sbjct: 208 YSFPPPPPYYS-PSPKVGYKSPPAPYVYSSPPPPPYYSPSPKVNY 251


>At3g54580.1 68416.m06039 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 951

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 219 YSAPVAKIAYSAPIAKVAYAAPVAKIAYNSAPLTQVTFSSPAISYH 264
           Y +P  K+ Y +P     Y AP  K+ Y S P   V +SSP   Y+
Sbjct: 751 YYSPSPKVHYKSP--PPPYYAPTPKVHYKSPPPPYV-YSSPPPPYY 793


>At5g35190.1 68418.m04170 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 328

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 216 KIAYSAPVAKIAYSAPIAKVAYAAPVAKIAYNSAPLTQVTFSSPAISY 263
           +++Y +P     YS P  +V+Y +P     YN  P       SP +SY
Sbjct: 268 EVSYKSPPPPPYYS-PSLEVSYKSPPPLFVYNFPPPPPFYSPSPKVSY 314


>At1g26320.1 68414.m03210 NADP-dependent oxidoreductase, putative
           similar to probable NADP-dependent oxidoreductase
           (zeta-crystallin homolog) P1 [SP|Q39172][gi:886428] and
           P2 [SP|Q39173][gi:886430], Arabidopsis thaliana; similar
           to allyl alcohol dehydrogenase GI:9758497 from
           [Arabidopsis thaliana]
          Length = 351

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 145 YSLVQPDGVHRI--VEYTSDQVNGFNAYVRYEGHP 177
           Y+LV P+GVH +  + Y   Q+ GF     Y+ +P
Sbjct: 266 YNLVDPEGVHNLPTILYKRIQLQGFGVCDFYDKYP 300


>At4g08410.1 68417.m01390 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 707

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 216 KIAYSAPVAKIAYSAPIAKVAYAAPVAKIAYNSAPLTQVTFSSPAISY 263
           K+ Y +P     YS+P     Y +P  K+ Y S P   V  S+P   Y
Sbjct: 345 KVDYKSPPPPYVYSSP--PPPYYSPSPKVDYKSPPPPYVYSSTPPPYY 390


>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 689

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 219 YSAPVAKIAYSAPIAKVAYAAPVAKIAYNSAPLTQVTFSSPAISY 263
           YS+P  +  Y +P  KVAY +P     Y+S P    +  SP ++Y
Sbjct: 384 YSSPPPQ--YYSPSPKVAYKSPPPPYVYSSPPPPYYS-PSPKVAY 425



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 216 KIAYSAPVAKIAYSAP-------IAKVAYAAPVAKIAYNSAPLTQVTFSSPAISY 263
           K+AY +P     YS+P         KVAY +P     Y+S P    +  SP + Y
Sbjct: 397 KVAYKSPPPPYVYSSPPPPYYSPSPKVAYKSPPPPYVYSSPPPPYYS-PSPKVDY 450


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,791,368
Number of Sequences: 28952
Number of extensions: 160066
Number of successful extensions: 313
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 16
length of query: 265
length of database: 12,070,560
effective HSP length: 80
effective length of query: 185
effective length of database: 9,754,400
effective search space: 1804564000
effective search space used: 1804564000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)