GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001486-TA|BGIBMGA001486-PA|IPR000618|Insect cuticle
protein
         (265 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0765 - 27910189-27912393,27912521-27912598                       29   5.1  
11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259           28   8.9  
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053           28   8.9  

>04_04_0765 - 27910189-27912393,27912521-27912598
          Length = 760

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 220 SAPVAKIAYSAPIAKVAYAAPVAKIAYNSAPLTQVTFSSPAIS 262
           +A VA    +AP A VA  +PVA +A  S+P      SSPA S
Sbjct: 400 AAAVAAAGSTAP-AVVAPDSPVAAVAVFSSPTAVAASSSPAAS 441


>11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259
          Length = 359

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 145 YSLVQPDGVHRIVEYTSD--QVNGFNAYVRYEGHPVAQPAKIAY 186
           Y+L +P+GVH +++  S   +V GF  +  +  +P+ +     Y
Sbjct: 274 YNLQEPEGVHNVIQILSKTIRVEGFAVFNHFGLYPMFEDEMARY 317


>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
          Length = 1613

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 152 GVHRIVEYTSDQVNGFNAYVRY 173
           GVH  ++Y  D++   NA++RY
Sbjct: 33  GVHGDIQYIKDELESMNAFLRY 54


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,029,357
Number of Sequences: 37544
Number of extensions: 202696
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 4
length of query: 265
length of database: 14,793,348
effective HSP length: 81
effective length of query: 184
effective length of database: 11,752,284
effective search space: 2162420256
effective search space used: 2162420256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)