GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001485-TA|BGIBMGA001485-PA|undefined
         (65 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3A637 Cluster: Putative formate dehydrogenase; n=1; Pe...    31   3.3  
UniRef50_P28187 Cluster: Ras-related protein ARA-4; n=35; Magnol...    31   4.4  

>UniRef50_Q3A637 Cluster: Putative formate dehydrogenase; n=1;
           Pelobacter carbinolicus DSM 2380|Rep: Putative formate
           dehydrogenase - Pelobacter carbinolicus (strain DSM 2380
           / Gra Bd 1)
          Length = 307

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 34  VSVTVGRGEFNPNGQSTLTEEFES 57
           ++ T+G G+F PNG++ LT  FE+
Sbjct: 115 IAKTIGIGDFTPNGETVLTTPFEN 138


>UniRef50_P28187 Cluster: Ras-related protein ARA-4; n=35;
          Magnoliophyta|Rep: Ras-related protein ARA-4 -
          Arabidopsis thaliana (Mouse-ear cress)
          Length = 214

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
          +S + K+ +     R EFNPN ++T+  EF+++
Sbjct: 20 DSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQ 52


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.312    0.128    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,595,505
Number of Sequences: 1657284
Number of extensions: 1301121
Number of successful extensions: 2028
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2026
Number of HSP's gapped (non-prelim): 2
length of query: 65
length of database: 575,637,011
effective HSP length: 45
effective length of query: 20
effective length of database: 501,059,231
effective search space: 10021184620
effective search space used: 10021184620
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 65 (30.3 bits)