GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001485-TA|BGIBMGA001485-PA|undefined
         (65 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   1.4  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   1.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   1.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    20   1.8  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    19   4.2  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    19   4.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    18   7.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    18   7.4  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    18   9.8  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 1.4
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 1   MKNKAEXXXXXXXXXXLILRHGGLC 25
           M N A+          ++++HGG C
Sbjct: 92  MYNSADEGFDGTFQTNVVVKHGGSC 116


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 1.4
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 1   MKNKAEXXXXXXXXXXLILRHGGLC 25
           M N A+          ++++HGG C
Sbjct: 92  MYNSADEGFDGTFQTNVVVKHGGSC 116


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 1.4
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 1   MKNKAEXXXXXXXXXXLILRHGGLC 25
           M N A+          ++++HGG C
Sbjct: 92  MYNSADEGFDGTFQTNVVVKHGGSC 116


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.2 bits (40), Expect = 1.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 25  CESTISKTQVSVTVGRGEFNPNGQ 48
           C+S+ S+ +V V V  G+   NG+
Sbjct: 425 CDSSESRKEVYVRVPLGQRFSNGE 448


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
          protein 12 protein.
          Length = 127

 Score = 19.0 bits (37), Expect = 4.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 31 KTQVSVTVGRGEFNPNGQ 48
          K  V+  + RG+ +P+GQ
Sbjct: 42 KNYVNCLLDRGKCSPDGQ 59


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
          protein protein.
          Length = 127

 Score = 19.0 bits (37), Expect = 4.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 31 KTQVSVTVGRGEFNPNGQ 48
          K  V+  + RG+ +P+GQ
Sbjct: 42 KNYVNCLLDRGKCSPDGQ 59


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 18.2 bits (35), Expect = 7.4
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 1   MKNKAEXXXXXXXXXXLILRHGGLC 25
           M N A+          ++++H G C
Sbjct: 92  MYNSADEGFDGTFQTNVVVKHNGSC 116


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 18.2 bits (35), Expect = 7.4
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 1   MKNKAEXXXXXXXXXXLILRHGGLC 25
           M N A+          ++++H G C
Sbjct: 92  MYNSADEGFDGTFQTNVVVKHNGSC 116


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
          protein 14 protein.
          Length = 126

 Score = 17.8 bits (34), Expect = 9.8
 Identities = 4/20 (20%), Positives = 12/20 (60%)

Query: 29 ISKTQVSVTVGRGEFNPNGQ 48
          +++  +   +G+G+  P G+
Sbjct: 39 LTRNYIDCILGKGKCTPEGE 58


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.128    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,511
Number of Sequences: 317
Number of extensions: 274
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 65
length of database: 114,650
effective HSP length: 43
effective length of query: 22
effective length of database: 101,019
effective search space:  2222418
effective search space used:  2222418
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.3 bits)
S2: 34 (17.8 bits)