GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001485-TA|BGIBMGA001485-PA|undefined
         (65 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    24   2.9  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    23   5.0  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    23   6.6  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    22   8.7  

>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 214

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
          +S + K+ + +   R EFN   +ST+  EF ++
Sbjct: 18 DSGVGKSNLLMRFTRNEFNIESKSTIGVEFATR 50


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 38  VGRGEFNPNGQSTLTEEFESKLRM 61
           V    F+P+G+   T  F+S +R+
Sbjct: 392 VNHASFSPDGRCIATASFDSSVRL 415


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 49  STLTEEFESKLRMSWG 64
           S+L+EEF SK+   WG
Sbjct: 212 SSLSEEFLSKILKLWG 227


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 36   VTVGRGEFNPNGQSTLTEEFESKLRM 61
            V  GRGE   N +S L++  E  + M
Sbjct: 1036 VPAGRGELVMNRRSELSQSIEQDISM 1061


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.128    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,171
Number of Sequences: 5004
Number of extensions: 5090
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 65
length of database: 2,362,478
effective HSP length: 45
effective length of query: 20
effective length of database: 2,137,298
effective search space: 42745960
effective search space used: 42745960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)