BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001485-TA|BGIBMGA001485-PA|undefined (65 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 24 2.9 SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 23 5.0 SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|... 23 6.6 SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 22 8.7 >SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1|||Manual Length = 214 Score = 23.8 bits (49), Expect = 2.9 Identities = 10/33 (30%), Positives = 19/33 (57%) Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58 +S + K+ + + R EFN +ST+ EF ++ Sbjct: 18 DSGVGKSNLLMRFTRNEFNIESKSTIGVEFATR 50 >SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 502 Score = 23.0 bits (47), Expect = 5.0 Identities = 8/24 (33%), Positives = 14/24 (58%) Query: 38 VGRGEFNPNGQSTLTEEFESKLRM 61 V F+P+G+ T F+S +R+ Sbjct: 392 VNHASFSPDGRCIATASFDSSVRL 415 >SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr 1|||Manual Length = 270 Score = 22.6 bits (46), Expect = 6.6 Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 49 STLTEEFESKLRMSWG 64 S+L+EEF SK+ WG Sbjct: 212 SSLSEEFLSKILKLWG 227 >SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1194 Score = 22.2 bits (45), Expect = 8.7 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 36 VTVGRGEFNPNGQSTLTEEFESKLRM 61 V GRGE N +S L++ E + M Sbjct: 1036 VPAGRGELVMNRRSELSQSIEQDISM 1061 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.312 0.128 0.366 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 222,171 Number of Sequences: 5004 Number of extensions: 5090 Number of successful extensions: 6 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 4 length of query: 65 length of database: 2,362,478 effective HSP length: 45 effective length of query: 20 effective length of database: 2,137,298 effective search space: 42745960 effective search space used: 42745960 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.9 bits) S2: 45 (22.2 bits)
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