GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001485-TA|BGIBMGA001485-PA|undefined
         (65 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1397 + 26269186-26269525,26269727-26269932,26270225-262703...    30   0.27 
12_02_0738 + 22669557-22669756,22669868-22669916,22670620-226706...    28   1.1  
09_02_0222 + 5968232-5968467,5970811-5971187,5972216-5972256,597...    27   1.4  
10_06_0181 - 11532765-11533203,11536867-11537036                       26   3.3  

>07_03_1397 +
          26269186-26269525,26269727-26269932,26270225-26270327,
          26270570-26270577
          Length = 218

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 24 LCESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
          L +S++ K+ +     R EF PN +ST+  EF+++
Sbjct: 20 LGDSSVGKSNLLARFARNEFYPNSKSTIGVEFQTQ 54


>12_02_0738 +
           22669557-22669756,22669868-22669916,22670620-22670657,
           22670977-22671058,22671146-22671195,22671381-22671847,
           22671992-22672155,22672242-22672448,22672554-22672710,
           22672858-22672965,22673161-22673234,22673364-22673521,
           22673728-22673788,22673858-22673965
          Length = 640

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 24  LCESTISKTQVSVTVGRGEFNPNGQSTLTEE 54
           + +  +SK +V + V RG+F+ +G+ + TEE
Sbjct: 184 ITDGPLSKVKVEIVVLRGDFSNDGRVSWTEE 214


>09_02_0222 +
          5968232-5968467,5970811-5971187,5972216-5972256,
          5972808-5972843
          Length = 229

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
          +S + K+Q+     R EFN + ++T+  EF+++
Sbjct: 26 DSAVGKSQLLARFARNEFNLDSKATIGVEFQTR 58


>10_06_0181 - 11532765-11533203,11536867-11537036
          Length = 202

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/33 (27%), Positives = 21/33 (63%)

Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
          +S + K+Q+     R EF+ + ++T+  EF+++
Sbjct: 18 DSAVGKSQILARFARNEFSIDSKATIGVEFQTR 50


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.128    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,111
Number of Sequences: 37544
Number of extensions: 35982
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 4
length of query: 65
length of database: 14,793,348
effective HSP length: 45
effective length of query: 20
effective length of database: 13,103,868
effective search space: 262077360
effective search space used: 262077360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)