GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001485-TA|BGIBMGA001485-PA|undefined
         (65 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084520-1|AAD38427.1| 1849|Homo sapiens brefeldin A-inhibited g...    27   9.6  

>AF084520-1|AAD38427.1| 1849|Homo sapiens brefeldin A-inhibited
           guanine nucleotide-exchange protein 1 protein.
          Length = 1849

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 17  LILRHGGL-CESTISKTQVSVTVGRGEFNPNGQSTLTEEFESKLRMS 62
           L LR  GL C  +ISK  V  +  +   NPN Q+TL +E  S+  MS
Sbjct: 606 LSLRKKGLECLVSISKCMVEWSKDQ-YVNPNSQTTLGQEKPSEQEMS 651


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.312    0.128    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,534,844
Number of Sequences: 224733
Number of extensions: 175200
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 1
length of query: 65
length of database: 73,234,838
effective HSP length: 44
effective length of query: 21
effective length of database: 63,346,586
effective search space: 1330278306
effective search space used: 1330278306
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)