GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001485-TA|BGIBMGA001485-PA|undefined
         (65 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly...    25   6.6  
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly...    25   6.6  
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly...    25   6.6  
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei...    25   6.6  
AF017745-1|AAD01631.1|  124|Caenorhabditis elegans ladder protei...    25   6.6  
Z54284-5|CAA91062.1|  444|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
           polyprotein allergen related,post-translationnally
           cleaved, the diverse 14.5 kDa cleavageproducts bind
           lipids and retinol (164.6 kD) protein.
          Length = 1440

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 30  SKTQVSVTVGRGEFNPNGQSTLTEEFESKLRM 61
           S+ Q  V    G+   + Q TLTEEF+ K ++
Sbjct: 303 SEVQAKVKEFFGQLPADQQKTLTEEFKGKCKV 334



 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 30  SKTQVSVTVGRGEFNPNGQSTLTEEFESKLRM 61
           S+ Q  V    G+   + Q TLTEEF+ K ++
Sbjct: 551 SEVQAKVKEFFGQLPADQQKTLTEEFKGKCKV 582


>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
           polyprotein allergen relatedprotein 1, isoform c
           protein.
          Length = 1198

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 30  SKTQVSVTVGRGEFNPNGQSTLTEEFESKLRM 61
           S+ Q  V    G+   + Q TLTEEF+ K ++
Sbjct: 309 SEVQAKVKEFFGQLPADQQKTLTEEFKGKCKV 340


>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
           polyprotein allergen relatedprotein 1, isoform a
           protein.
          Length = 1440

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 30  SKTQVSVTVGRGEFNPNGQSTLTEEFESKLRM 61
           S+ Q  V    G+   + Q TLTEEF+ K ++
Sbjct: 303 SEVQAKVKEFFGQLPADQQKTLTEEFKGKCKV 334



 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 30  SKTQVSVTVGRGEFNPNGQSTLTEEFESKLRM 61
           S+ Q  V    G+   + Q TLTEEF+ K ++
Sbjct: 551 SEVQAKVKEFFGQLPADQQKTLTEEFKGKCKV 582


>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
           protein.
          Length = 1198

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 30  SKTQVSVTVGRGEFNPNGQSTLTEEFESKLRM 61
           S+ Q  V    G+   + Q TLTEEF+ K ++
Sbjct: 308 SEVQAKVKEFFGQLPADQQKTLTEEFKGKCKV 339



 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 30  SKTQVSVTVGRGEFNPNGQSTLTEEFESKLRM 61
           S+ Q  V    G+   + Q TLTEEF+ K ++
Sbjct: 681 SEVQAKVKEYFGQLPADQQKTLTEEFKGKCKV 712


>AF017745-1|AAD01631.1|  124|Caenorhabditis elegans ladder protein
          protein.
          Length = 124

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 30 SKTQVSVTVGRGEFNPNGQSTLTEEFESKLRM 61
          S+ Q  V    G+   + Q TLTEEF+ K ++
Sbjct: 31 SEVQAKVKEFFGQLPADQQKTLTEEFKGKCKV 62


>Z54284-5|CAA91062.1|  444|Caenorhabditis elegans Hypothetical
           protein D2085.6 protein.
          Length = 444

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 29  ISKTQVSVTVGRGEFNPNGQSTLTEEFESKL 59
           +S T    TV RG+ +PN  ST+    E+ L
Sbjct: 160 VSYTSKENTVLRGKLDPNKVSTIPNAIETSL 190


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.128    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,230,556
Number of Sequences: 27539
Number of extensions: 30135
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 18
length of query: 65
length of database: 12,573,161
effective HSP length: 45
effective length of query: 20
effective length of database: 11,333,906
effective search space: 226678120
effective search space used: 226678120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)