Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001485-TA|BGIBMGA001485-PA|undefined
(65 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g43130.1 68415.m05356 Ras-related protein (ARA-4) / small GTP... 31 0.095
At5g47520.1 68418.m05867 Ras-related GTP-binding protein, putati... 29 0.51
At3g12160.1 68416.m01516 Ras-related GTP-binding family protein ... 29 0.51
At2g41620.1 68415.m05143 nucleoporin interacting component famil... 28 0.67
At3g07410.1 68416.m00883 Ras-related GTP-binding family protein ... 26 2.7
At5g65270.1 68418.m08210 Ras-related GTP-binding family protein ... 26 3.6
At4g39990.1 68417.m05663 Ras-related GTP-binding protein, putati... 25 4.7
At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138... 25 4.7
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro... 25 4.7
At1g55980.1 68414.m06421 expressed protein 25 4.7
At5g47960.1 68418.m05925 Ras-related GTP-binding family protein ... 25 6.2
At2g31680.1 68415.m03867 Ras-related GTP-binding protein, putati... 25 6.2
At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1) ide... 25 6.2
At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1) ide... 25 6.2
At1g05810.1 68414.m00608 Ras-related protein (ARA-1) (ARA) / sma... 25 6.2
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 25 8.3
At1g78840.1 68414.m09190 F-box family protein contains F-box dom... 25 8.3
>At2g43130.1 68415.m05356 Ras-related protein (ARA-4) / small
GTP-binding protein, putative identical to SP:P28187
Ras-related protein ARA-4 {Arabidopsis thaliana}
Length = 214
Score = 31.1 bits (67), Expect = 0.095
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
+S + K+ + R EFNPN ++T+ EF+++
Sbjct: 20 DSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQ 52
>At5g47520.1 68418.m05867 Ras-related GTP-binding protein,
putative similar to GTP-binding protein RAB11J
GI:1370160 from [Lotus japonicus]
Length = 221
Score = 28.7 bits (61), Expect = 0.51
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
+S + K+ + R EF PN +ST+ EF+++
Sbjct: 22 DSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQ 54
>At3g12160.1 68416.m01516 Ras-related GTP-binding family protein
similar to ras-related GTP-binding protein RGP1
SP:P25766 from [Oryza sativa];contains Pfam profile:
PF00071 Ras family
Length = 222
Score = 28.7 bits (61), Expect = 0.51
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
+S + KTQ+ R EF+ + ++T+ EF++K
Sbjct: 23 DSAVGKTQLLARFARNEFSVDSKATIGVEFQTK 55
>At2g41620.1 68415.m05143 nucleoporin interacting component family
protein contains Pfam profile PF04097: Nucleoporin
interacting component
Length = 861
Score = 28.3 bits (60), Expect = 0.67
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 1 MKNKAEXXXXXXXXXXLILRHGGLCESTISKTQVSVTVGRGEFNPNGQSTLTEEFESKLR 60
M + AE + L HG L + Q + TVG G+ +G+S + ++ + L
Sbjct: 560 MDSNAEASSMIRQYGSMFLHHGDLQMTVEYYAQAAATVGGGQLAWSGRSNVDQQRQRNLM 619
Query: 61 M 61
+
Sbjct: 620 L 620
>At3g07410.1 68416.m00883 Ras-related GTP-binding family protein
contains Pfam profile: PF00071 Ras family
Length = 217
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESKL 59
+S + K+ + R EF+ N ++T+ EF+++L
Sbjct: 20 DSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQL 53
>At5g65270.1 68418.m08210 Ras-related GTP-binding family protein
similar to GTP-binding protein RAB11A GI:1370142 from
[Lotus japonicus]; contains Pfam profile: PF00071 Ras
family
Length = 226
Score = 25.8 bits (54), Expect = 3.6
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
+S + K+Q+ R EF+ + ++T+ EF+++
Sbjct: 25 DSAVGKSQILARYARDEFSLDSKATIGVEFQTR 57
>At4g39990.1 68417.m05663 Ras-related GTP-binding protein,
putative similar to GTP-binding protein GI:303738 from
[Pisum sativum]
Length = 224
Score = 25.4 bits (53), Expect = 4.7
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
+S + K+Q+ R EF+ + ++T+ EF+++
Sbjct: 25 DSAVGKSQLLARFARDEFSMDSKATIGVEFQTR 57
>At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as '
auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 572
Score = 25.4 bits (53), Expect = 4.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 36 VTVGRGEFNPNGQSTLTEEFESKLR 60
V GRGEF+ N + + E+ E+K +
Sbjct: 470 VRAGRGEFHENPSTCICEDTEAKAK 494
>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
profile PF01593: amine oxidase, flavin-containing
Length = 384
Score = 25.4 bits (53), Expect = 4.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 22 GGLCESTISKTQVSVTVGRGEFNPNGQSTLTEE 54
G +C ST+++ VSVT+ P G+ + E
Sbjct: 32 GAVCASTLARNGVSVTIFDSGRGPGGRMSQRRE 64
>At1g55980.1 68414.m06421 expressed protein
Length = 464
Score = 25.4 bits (53), Expect = 4.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 22 GGLCESTISKTQVSVTVGRGEFNPNGQSTLTEE 54
G +C ST+++ VSVT+ P G+ + E
Sbjct: 170 GAVCASTLARNGVSVTIFDSGRGPGGRMSQRRE 202
>At5g47960.1 68418.m05925 Ras-related GTP-binding family protein
contains Pfam profile: PF00071 Ras family
Length = 223
Score = 25.0 bits (52), Expect = 6.2
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
+S + K+Q+ R EF+ ++T+ EF+++
Sbjct: 23 DSAVGKSQLLARFSRNEFSIESKATIGVEFQTR 55
>At2g31680.1 68415.m03867 Ras-related GTP-binding protein,
putative similar to GTP-binding protein GI:289370 from
[Brassica napus]
Length = 219
Score = 25.0 bits (52), Expect = 6.2
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
+S + K+ + R EFN + ++T+ EF+++
Sbjct: 20 DSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQ 52
>At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1)
identical to holocarboxylase synthetase 1 (hcs1)
[Arabidopsis thaliana] GI:19698365
Length = 367
Score = 25.0 bits (52), Expect = 6.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 19 LRHGG-LCESTISKTQVSVTVGRGEFNPNGQST 50
L+ GG LC ST + +V+VG G NGQ T
Sbjct: 219 LKVGGILCTSTYRSKKFNVSVGVGLNVDNGQPT 251
>At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1)
identical to holocarboxylase synthetase 1 (hcs1)
[Arabidopsis thaliana] GI:19698365
Length = 367
Score = 25.0 bits (52), Expect = 6.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 19 LRHGG-LCESTISKTQVSVTVGRGEFNPNGQST 50
L+ GG LC ST + +V+VG G NGQ T
Sbjct: 219 LKVGGILCTSTYRSKKFNVSVGVGLNVDNGQPT 251
>At1g05810.1 68414.m00608 Ras-related protein (ARA-1) (ARA) /
small GTP-binding protein, putative nearly identical to
SP:P19892 Ras-related protein ARA-1 [Arabidopsis
thaliana] (Gene 76:313-319(1989))
Length = 261
Score = 25.0 bits (52), Expect = 6.2
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
+S + K+ + R EF+ N ++T+ EF+++
Sbjct: 63 DSAVGKSNLLSRYARNEFSANSKATIGVEFQTQ 95
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 24.6 bits (51), Expect = 8.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 23 GLCESTISKTQVSVTVGRGEFNPNGQSTLTEEFESKLRMS 62
G C T+ + S V +F+PNG+ L +S L++S
Sbjct: 202 GTCLKTLIDDK-SPAVSFAKFSPNGKFILVATLDSTLKLS 240
>At1g78840.1 68414.m09190 F-box family protein contains F-box domain
Pfam:PF00646
Length = 439
Score = 24.6 bits (51), Expect = 8.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 27 STISKTQVSVTVGRGEFNPNGQSTL 51
S S +V +++ +GEFNP T+
Sbjct: 244 SVCSPLKVDISISKGEFNPINSLTM 268
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.128 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,201,202
Number of Sequences: 28952
Number of extensions: 29926
Number of successful extensions: 61
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 17
length of query: 65
length of database: 12,070,560
effective HSP length: 45
effective length of query: 20
effective length of database: 10,767,720
effective search space: 215354400
effective search space used: 215354400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)
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