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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001485-TA|BGIBMGA001485-PA|undefined
         (65 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43130.1 68415.m05356 Ras-related protein (ARA-4) / small GTP...    31   0.095
At5g47520.1 68418.m05867 Ras-related GTP-binding protein, putati...    29   0.51 
At3g12160.1 68416.m01516 Ras-related GTP-binding family protein ...    29   0.51 
At2g41620.1 68415.m05143 nucleoporin interacting component famil...    28   0.67 
At3g07410.1 68416.m00883 Ras-related GTP-binding family protein ...    26   2.7  
At5g65270.1 68418.m08210 Ras-related GTP-binding family protein ...    26   3.6  
At4g39990.1 68417.m05663 Ras-related GTP-binding protein, putati...    25   4.7  
At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138...    25   4.7  
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro...    25   4.7  
At1g55980.1 68414.m06421 expressed protein                             25   4.7  
At5g47960.1 68418.m05925 Ras-related GTP-binding family protein ...    25   6.2  
At2g31680.1 68415.m03867 Ras-related GTP-binding protein, putati...    25   6.2  
At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1) ide...    25   6.2  
At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1) ide...    25   6.2  
At1g05810.1 68414.m00608 Ras-related protein (ARA-1) (ARA) / sma...    25   6.2  
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea...    25   8.3  
At1g78840.1 68414.m09190 F-box family protein contains F-box dom...    25   8.3  

>At2g43130.1 68415.m05356 Ras-related protein (ARA-4) / small
          GTP-binding protein, putative identical to SP:P28187
          Ras-related protein ARA-4 {Arabidopsis thaliana}
          Length = 214

 Score = 31.1 bits (67), Expect = 0.095
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
          +S + K+ +     R EFNPN ++T+  EF+++
Sbjct: 20 DSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQ 52


>At5g47520.1 68418.m05867 Ras-related GTP-binding protein,
          putative similar to GTP-binding protein RAB11J
          GI:1370160 from [Lotus japonicus]
          Length = 221

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
          +S + K+ +     R EF PN +ST+  EF+++
Sbjct: 22 DSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQ 54


>At3g12160.1 68416.m01516 Ras-related GTP-binding family protein
          similar to ras-related GTP-binding protein RGP1
          SP:P25766 from [Oryza sativa];contains Pfam profile:
          PF00071 Ras family
          Length = 222

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
          +S + KTQ+     R EF+ + ++T+  EF++K
Sbjct: 23 DSAVGKTQLLARFARNEFSVDSKATIGVEFQTK 55


>At2g41620.1 68415.m05143 nucleoporin interacting component family
           protein contains Pfam profile PF04097: Nucleoporin
           interacting component
          Length = 861

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 1   MKNKAEXXXXXXXXXXLILRHGGLCESTISKTQVSVTVGRGEFNPNGQSTLTEEFESKLR 60
           M + AE          + L HG L  +     Q + TVG G+   +G+S + ++ +  L 
Sbjct: 560 MDSNAEASSMIRQYGSMFLHHGDLQMTVEYYAQAAATVGGGQLAWSGRSNVDQQRQRNLM 619

Query: 61  M 61
           +
Sbjct: 620 L 620


>At3g07410.1 68416.m00883 Ras-related GTP-binding family protein
          contains Pfam profile: PF00071 Ras family
          Length = 217

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESKL 59
          +S + K+ +     R EF+ N ++T+  EF+++L
Sbjct: 20 DSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQL 53


>At5g65270.1 68418.m08210 Ras-related GTP-binding family protein
          similar to GTP-binding protein RAB11A GI:1370142 from
          [Lotus japonicus]; contains Pfam profile: PF00071 Ras
          family
          Length = 226

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/33 (27%), Positives = 21/33 (63%)

Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
          +S + K+Q+     R EF+ + ++T+  EF+++
Sbjct: 25 DSAVGKSQILARYARDEFSLDSKATIGVEFQTR 57


>At4g39990.1 68417.m05663 Ras-related GTP-binding protein,
          putative similar to GTP-binding protein GI:303738 from
          [Pisum sativum]
          Length = 224

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/33 (27%), Positives = 21/33 (63%)

Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
          +S + K+Q+     R EF+ + ++T+  EF+++
Sbjct: 25 DSAVGKSQLLARFARDEFSMDSKATIGVEFQTR 57


>At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as '
           auxin-independent growth promoter -related' based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 572

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 36  VTVGRGEFNPNGQSTLTEEFESKLR 60
           V  GRGEF+ N  + + E+ E+K +
Sbjct: 470 VRAGRGEFHENPSTCICEDTEAKAK 494


>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
          profile PF01593: amine oxidase, flavin-containing
          Length = 384

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 22 GGLCESTISKTQVSVTVGRGEFNPNGQSTLTEE 54
          G +C ST+++  VSVT+      P G+ +   E
Sbjct: 32 GAVCASTLARNGVSVTIFDSGRGPGGRMSQRRE 64


>At1g55980.1 68414.m06421 expressed protein
          Length = 464

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 22  GGLCESTISKTQVSVTVGRGEFNPNGQSTLTEE 54
           G +C ST+++  VSVT+      P G+ +   E
Sbjct: 170 GAVCASTLARNGVSVTIFDSGRGPGGRMSQRRE 202


>At5g47960.1 68418.m05925 Ras-related GTP-binding family protein
          contains Pfam profile: PF00071 Ras family
          Length = 223

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
          +S + K+Q+     R EF+   ++T+  EF+++
Sbjct: 23 DSAVGKSQLLARFSRNEFSIESKATIGVEFQTR 55


>At2g31680.1 68415.m03867 Ras-related GTP-binding protein,
          putative similar to GTP-binding protein GI:289370 from
          [Brassica napus]
          Length = 219

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
          +S + K+ +     R EFN + ++T+  EF+++
Sbjct: 20 DSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQ 52


>At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1)
           identical to holocarboxylase synthetase 1 (hcs1)
           [Arabidopsis thaliana] GI:19698365
          Length = 367

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 19  LRHGG-LCESTISKTQVSVTVGRGEFNPNGQST 50
           L+ GG LC ST    + +V+VG G    NGQ T
Sbjct: 219 LKVGGILCTSTYRSKKFNVSVGVGLNVDNGQPT 251


>At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1)
           identical to holocarboxylase synthetase 1 (hcs1)
           [Arabidopsis thaliana] GI:19698365
          Length = 367

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 19  LRHGG-LCESTISKTQVSVTVGRGEFNPNGQST 50
           L+ GG LC ST    + +V+VG G    NGQ T
Sbjct: 219 LKVGGILCTSTYRSKKFNVSVGVGLNVDNGQPT 251


>At1g05810.1 68414.m00608 Ras-related protein (ARA-1) (ARA) /
          small GTP-binding protein, putative nearly identical to
          SP:P19892 Ras-related protein ARA-1 [Arabidopsis
          thaliana] (Gene 76:313-319(1989))
          Length = 261

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58
          +S + K+ +     R EF+ N ++T+  EF+++
Sbjct: 63 DSAVGKSNLLSRYARNEFSANSKATIGVEFQTQ 95


>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
           family protein similar to C. elegans putative WD-repeat
           protein C14B1.4 (SP:Q17963)
          Length = 333

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 23  GLCESTISKTQVSVTVGRGEFNPNGQSTLTEEFESKLRMS 62
           G C  T+   + S  V   +F+PNG+  L    +S L++S
Sbjct: 202 GTCLKTLIDDK-SPAVSFAKFSPNGKFILVATLDSTLKLS 240


>At1g78840.1 68414.m09190 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 439

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 27  STISKTQVSVTVGRGEFNPNGQSTL 51
           S  S  +V +++ +GEFNP    T+
Sbjct: 244 SVCSPLKVDISISKGEFNPINSLTM 268


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.128    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,201,202
Number of Sequences: 28952
Number of extensions: 29926
Number of successful extensions: 61
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 17
length of query: 65
length of database: 12,070,560
effective HSP length: 45
effective length of query: 20
effective length of database: 10,767,720
effective search space: 215354400
effective search space used: 215354400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)

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