BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001485-TA|BGIBMGA001485-PA|undefined (65 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g43130.1 68415.m05356 Ras-related protein (ARA-4) / small GTP... 31 0.095 At5g47520.1 68418.m05867 Ras-related GTP-binding protein, putati... 29 0.51 At3g12160.1 68416.m01516 Ras-related GTP-binding family protein ... 29 0.51 At2g41620.1 68415.m05143 nucleoporin interacting component famil... 28 0.67 At3g07410.1 68416.m00883 Ras-related GTP-binding family protein ... 26 2.7 At5g65270.1 68418.m08210 Ras-related GTP-binding family protein ... 26 3.6 At4g39990.1 68417.m05663 Ras-related GTP-binding protein, putati... 25 4.7 At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138... 25 4.7 At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro... 25 4.7 At1g55980.1 68414.m06421 expressed protein 25 4.7 At5g47960.1 68418.m05925 Ras-related GTP-binding family protein ... 25 6.2 At2g31680.1 68415.m03867 Ras-related GTP-binding protein, putati... 25 6.2 At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1) ide... 25 6.2 At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1) ide... 25 6.2 At1g05810.1 68414.m00608 Ras-related protein (ARA-1) (ARA) / sma... 25 6.2 At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 25 8.3 At1g78840.1 68414.m09190 F-box family protein contains F-box dom... 25 8.3 >At2g43130.1 68415.m05356 Ras-related protein (ARA-4) / small GTP-binding protein, putative identical to SP:P28187 Ras-related protein ARA-4 {Arabidopsis thaliana} Length = 214 Score = 31.1 bits (67), Expect = 0.095 Identities = 11/33 (33%), Positives = 21/33 (63%) Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58 +S + K+ + R EFNPN ++T+ EF+++ Sbjct: 20 DSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQ 52 >At5g47520.1 68418.m05867 Ras-related GTP-binding protein, putative similar to GTP-binding protein RAB11J GI:1370160 from [Lotus japonicus] Length = 221 Score = 28.7 bits (61), Expect = 0.51 Identities = 11/33 (33%), Positives = 20/33 (60%) Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58 +S + K+ + R EF PN +ST+ EF+++ Sbjct: 22 DSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQ 54 >At3g12160.1 68416.m01516 Ras-related GTP-binding family protein similar to ras-related GTP-binding protein RGP1 SP:P25766 from [Oryza sativa];contains Pfam profile: PF00071 Ras family Length = 222 Score = 28.7 bits (61), Expect = 0.51 Identities = 11/33 (33%), Positives = 21/33 (63%) Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58 +S + KTQ+ R EF+ + ++T+ EF++K Sbjct: 23 DSAVGKTQLLARFARNEFSVDSKATIGVEFQTK 55 >At2g41620.1 68415.m05143 nucleoporin interacting component family protein contains Pfam profile PF04097: Nucleoporin interacting component Length = 861 Score = 28.3 bits (60), Expect = 0.67 Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 1 MKNKAEXXXXXXXXXXLILRHGGLCESTISKTQVSVTVGRGEFNPNGQSTLTEEFESKLR 60 M + AE + L HG L + Q + TVG G+ +G+S + ++ + L Sbjct: 560 MDSNAEASSMIRQYGSMFLHHGDLQMTVEYYAQAAATVGGGQLAWSGRSNVDQQRQRNLM 619 Query: 61 M 61 + Sbjct: 620 L 620 >At3g07410.1 68416.m00883 Ras-related GTP-binding family protein contains Pfam profile: PF00071 Ras family Length = 217 Score = 26.2 bits (55), Expect = 2.7 Identities = 10/34 (29%), Positives = 21/34 (61%) Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESKL 59 +S + K+ + R EF+ N ++T+ EF+++L Sbjct: 20 DSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQL 53 >At5g65270.1 68418.m08210 Ras-related GTP-binding family protein similar to GTP-binding protein RAB11A GI:1370142 from [Lotus japonicus]; contains Pfam profile: PF00071 Ras family Length = 226 Score = 25.8 bits (54), Expect = 3.6 Identities = 9/33 (27%), Positives = 21/33 (63%) Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58 +S + K+Q+ R EF+ + ++T+ EF+++ Sbjct: 25 DSAVGKSQILARYARDEFSLDSKATIGVEFQTR 57 >At4g39990.1 68417.m05663 Ras-related GTP-binding protein, putative similar to GTP-binding protein GI:303738 from [Pisum sativum] Length = 224 Score = 25.4 bits (53), Expect = 4.7 Identities = 9/33 (27%), Positives = 21/33 (63%) Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58 +S + K+Q+ R EF+ + ++T+ EF+++ Sbjct: 25 DSAVGKSQLLARFARDEFSMDSKATIGVEFQTR 57 >At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as ' auxin-independent growth promoter -related' based on similarity to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana tabacum], which, due to scienitific fraud was retracted. Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908. PMID:10400497. Length = 572 Score = 25.4 bits (53), Expect = 4.7 Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 36 VTVGRGEFNPNGQSTLTEEFESKLR 60 V GRGEF+ N + + E+ E+K + Sbjct: 470 VRAGRGEFHENPSTCICEDTEAKAK 494 >At1g56000.1 68414.m06425 amine oxidase-related contains Pfam profile PF01593: amine oxidase, flavin-containing Length = 384 Score = 25.4 bits (53), Expect = 4.7 Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 22 GGLCESTISKTQVSVTVGRGEFNPNGQSTLTEE 54 G +C ST+++ VSVT+ P G+ + E Sbjct: 32 GAVCASTLARNGVSVTIFDSGRGPGGRMSQRRE 64 >At1g55980.1 68414.m06421 expressed protein Length = 464 Score = 25.4 bits (53), Expect = 4.7 Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 22 GGLCESTISKTQVSVTVGRGEFNPNGQSTLTEE 54 G +C ST+++ VSVT+ P G+ + E Sbjct: 170 GAVCASTLARNGVSVTIFDSGRGPGGRMSQRRE 202 >At5g47960.1 68418.m05925 Ras-related GTP-binding family protein contains Pfam profile: PF00071 Ras family Length = 223 Score = 25.0 bits (52), Expect = 6.2 Identities = 9/33 (27%), Positives = 20/33 (60%) Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58 +S + K+Q+ R EF+ ++T+ EF+++ Sbjct: 23 DSAVGKSQLLARFSRNEFSIESKATIGVEFQTR 55 >At2g31680.1 68415.m03867 Ras-related GTP-binding protein, putative similar to GTP-binding protein GI:289370 from [Brassica napus] Length = 219 Score = 25.0 bits (52), Expect = 6.2 Identities = 9/33 (27%), Positives = 20/33 (60%) Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58 +S + K+ + R EFN + ++T+ EF+++ Sbjct: 20 DSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQ 52 >At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1) identical to holocarboxylase synthetase 1 (hcs1) [Arabidopsis thaliana] GI:19698365 Length = 367 Score = 25.0 bits (52), Expect = 6.2 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 19 LRHGG-LCESTISKTQVSVTVGRGEFNPNGQST 50 L+ GG LC ST + +V+VG G NGQ T Sbjct: 219 LKVGGILCTSTYRSKKFNVSVGVGLNVDNGQPT 251 >At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1) identical to holocarboxylase synthetase 1 (hcs1) [Arabidopsis thaliana] GI:19698365 Length = 367 Score = 25.0 bits (52), Expect = 6.2 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 19 LRHGG-LCESTISKTQVSVTVGRGEFNPNGQST 50 L+ GG LC ST + +V+VG G NGQ T Sbjct: 219 LKVGGILCTSTYRSKKFNVSVGVGLNVDNGQPT 251 >At1g05810.1 68414.m00608 Ras-related protein (ARA-1) (ARA) / small GTP-binding protein, putative nearly identical to SP:P19892 Ras-related protein ARA-1 [Arabidopsis thaliana] (Gene 76:313-319(1989)) Length = 261 Score = 25.0 bits (52), Expect = 6.2 Identities = 9/33 (27%), Positives = 20/33 (60%) Query: 26 ESTISKTQVSVTVGRGEFNPNGQSTLTEEFESK 58 +S + K+ + R EF+ N ++T+ EF+++ Sbjct: 63 DSAVGKSNLLSRYARNEFSANSKATIGVEFQTQ 95 >At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat family protein similar to C. elegans putative WD-repeat protein C14B1.4 (SP:Q17963) Length = 333 Score = 24.6 bits (51), Expect = 8.3 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 23 GLCESTISKTQVSVTVGRGEFNPNGQSTLTEEFESKLRMS 62 G C T+ + S V +F+PNG+ L +S L++S Sbjct: 202 GTCLKTLIDDK-SPAVSFAKFSPNGKFILVATLDSTLKLS 240 >At1g78840.1 68414.m09190 F-box family protein contains F-box domain Pfam:PF00646 Length = 439 Score = 24.6 bits (51), Expect = 8.3 Identities = 9/25 (36%), Positives = 15/25 (60%) Query: 27 STISKTQVSVTVGRGEFNPNGQSTL 51 S S +V +++ +GEFNP T+ Sbjct: 244 SVCSPLKVDISISKGEFNPINSLTM 268 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.312 0.128 0.366 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,201,202 Number of Sequences: 28952 Number of extensions: 29926 Number of successful extensions: 61 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 17 length of query: 65 length of database: 12,070,560 effective HSP length: 45 effective length of query: 20 effective length of database: 10,767,720 effective search space: 215354400 effective search space used: 215354400 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.9 bits) S2: 51 (24.6 bits)
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